Pairwise Alignments

Query, 791 a.a., Transcription accessory protein (S1 RNA-binding domain) from Variovorax sp. SCN45

Subject, 822 a.a., Transcription accessory protein (S1 RNA-binding domain) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 1268 bits (3282), Expect = 0.0
 Identities = 657/794 (82%), Positives = 709/794 (89%), Gaps = 15/794 (1%)

Query: 1   MQKIIRQLAAEIKVGENQVKAAVELLDGGATVPFIARYRKEATDGLDDTQLRELEARLSY 60
           MQ+IIRQ+A EI+V E QV+AAVELLDGGATVPFIARYRKE T GLDD QLREL  RL Y
Sbjct: 34  MQQIIRQIATEIRVEERQVQAAVELLDGGATVPFIARYRKEVTGGLDDIQLRELSYRLDY 93

Query: 61  LRELEDRRVAVLKAIDEQGKLTPELRAAIEFAPTKQELEDIYLPFKQKRRTKGQIAREFG 120
           LRELEDRR AVLK+IDEQGKLT  LRAAI   PTKQELED+YLPFKQKRRTKGQIAREFG
Sbjct: 94  LRELEDRRAAVLKSIDEQGKLTDALRAAIAAVPTKQELEDLYLPFKQKRRTKGQIAREFG 153

Query: 121 IEPLADKLLADPTLDPAVEAKAFLQPATTLDDGKPGPDFSTVPLVLDGVRDILSERWAED 180
           IEPLADKL ADPTLDP+ EA AF +P   LDDGKPG DFSTVP VLDGVRDILSERWAED
Sbjct: 154 IEPLADKLFADPTLDPSTEAAAFTRPPEVLDDGKPGADFSTVPAVLDGVRDILSERWAED 213

Query: 181 AALVQSLRVWLWNEGLLKSSLMSGKDENNADVAKFRDYFEYDEPIGRVPSHRALAVFRGR 240
            +LVQ+LR WLW+EGLLKS+L++GKDEN  +VAKFRDYFEYDEPI RVPSHRALAVFRGR
Sbjct: 214 PSLVQNLREWLWSEGLLKSTLVNGKDENAPEVAKFRDYFEYDEPIARVPSHRALAVFRGR 273

Query: 241 ALDILDAKLVLPVEPE------PGK-PSVAEGRIALHLGWSHAGRPADDLLRKCVAWTWR 293
            L+ILDAKLVLP  P+      PG  PS+AEGRIALHLGWSH  R ADDLLRKC+AWTWR
Sbjct: 274 GLEILDAKLVLPEPPDAVPAGKPGATPSLAEGRIALHLGWSHKARAADDLLRKCMAWTWR 333

Query: 294 VKLALSTERDLFTRLREDAEKVAIKVFADNLRDLLLAAPAGPRVVMGLDPGIRTGVKVAV 353
           VKL+LS+ERDLF RLRE AE VAIKVFADNLRDLLLAAPAGP+VVMGLDPGIRTGVKVAV
Sbjct: 334 VKLSLSSERDLFARLRESAEAVAIKVFADNLRDLLLAAPAGPKVVMGLDPGIRTGVKVAV 393

Query: 354 VDSTGKLVETATVFPHEPRKDWEGSLHTLGKLCAKHGVNLIAIGNGTASRETDKLAADLI 413
           VD+TGKLV+TATV+PHEPR+DW+G+LHTL  L  KHGVNLIAIGNGTASRETDKLAADLI
Sbjct: 394 VDATGKLVDTATVYPHEPRRDWDGALHTLALLGRKHGVNLIAIGNGTASRETDKLAADLI 453

Query: 414 KLLAKMAAQAGAPEIQVDKVVVSEAGASVYSASEFASQEMPDVDVSLRGAASIARRLQDP 473
           KLL K      A    V KVVVSEAGASVYSASEFASQEMPDVDVSLRGAASIARRLQDP
Sbjct: 454 KLLEK------ANLTGVQKVVVSEAGASVYSASEFASQEMPDVDVSLRGAASIARRLQDP 507

Query: 474 LAELVKIDPKSIGVGQYQHDVNQSELARTLQAVVEDCVNSVGVDLNTASVPLLSRVSGLS 533
           LAELVKIDPKSIGVGQYQHDVNQSELARTL+AVVEDCVN VGVDLNTASVPLLSRVSGLS
Sbjct: 508 LAELVKIDPKSIGVGQYQHDVNQSELARTLEAVVEDCVNGVGVDLNTASVPLLSRVSGLS 567

Query: 534 ASVAKAVVRWRESNGAFATRKQLLDVTGFGPKAFEQSAGFLRIRGGTDPLDVTGVHPETY 593
            SVAKAVVRWRE+NGAF +R+QL+DV G G K FEQSAGFLRIRGG +PLD+TGVHPETY
Sbjct: 568 GSVAKAVVRWRETNGAFKSRQQLMDVAGLGAKTFEQSAGFLRIRGGDNPLDMTGVHPETY 627

Query: 594 PLVEQIIVKTGKPIAELMGRAEMLKTLKPELFANEKFGVITVKDILGELEKPGRDPRPDF 653
            +VEQI+ KTGKP+AELMGRA+MLKTL+PELFANE+FGVITVKDILGELEKPGRDPRPDF
Sbjct: 628 AVVEQIMEKTGKPVAELMGRADMLKTLRPELFANERFGVITVKDILGELEKPGRDPRPDF 687

Query: 654 KVARFNDGVDDIADLKEGMILEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVNDARE 713
           +VARFN+GVDDI+DL+EGM+LEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVNDARE
Sbjct: 688 QVARFNEGVDDISDLREGMVLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVNDARE 747

Query: 714 VVKTGDIVKVKVMEVDVARKRIGLSMKLDAAPARRDGPRDNRFEGAGRGQQQQGRRDNSP 773
           +VKTGDIVKVKVMEVDVARKRIGLSMKLDAAPARRDGPRDNR+E   RGQ +     + P
Sbjct: 748 IVKTGDIVKVKVMEVDVARKRIGLSMKLDAAPARRDGPRDNRYE-PSRGQGRASGPASPP 806

Query: 774 QPAGQMASAFAKLQ 787
            P+  MASAFAKL+
Sbjct: 807 APSA-MASAFAKLK 819