Pairwise Alignments

Query, 791 a.a., Transcription accessory protein (S1 RNA-binding domain) from Variovorax sp. SCN45

Subject, 787 a.a., RNA-binding transcriptional accessory protein from Magnetospirillum magneticum AMB-1

 Score =  854 bits (2207), Expect = 0.0
 Identities = 457/791 (57%), Positives = 573/791 (72%), Gaps = 30/791 (3%)

Query: 4   IIRQLAAEIKVGENQVKAAVELLDGGATVPFIARYRKEATDGLDDTQLRELEARLSYLRE 63
           I  ++A E+ V  +QV A V++LD GATVPFIARYRKEATDGLDDTQLR LE RL YLRE
Sbjct: 13  ITNRIALELGVKPSQVAATVQMLDEGATVPFIARYRKEATDGLDDTQLRNLEERLGYLRE 72

Query: 64  LEDRRVAVLKAIDEQGKLTPELRAAIEFAPTKQELEDIYLPFKQKRRTKGQIAREFGIEP 123
           LEDRR A+L++I+EQGKLTP+L   I  A +K  LED+YLP+K KRRTK QIARE G+EP
Sbjct: 73  LEDRRAAILRSIEEQGKLTPDLAGQIGEADSKARLEDLYLPYKPKRRTKAQIAREAGLEP 132

Query: 124 LADKLLADPTLDPAVEAKAFLQPATTLDDGKPGPDFSTVPLVLDGVRDILSERWAEDAAL 183
           LAD LLADP L P   A+ ++     + D         V   LDG R IL ER+AEDA L
Sbjct: 133 LADALLADPALVPEQAAEPYVDAEKGVAD---------VKAALDGARQILMERFAEDAEL 183

Query: 184 VQSLRVWLWNEGLLKSSLMSGKDENNADVAKFRDYFEYDEPIGRVPSHRALAVFRGRALD 243
           + +LR  LW+ G+L S++  GK E  A   KF DYF+Y E I  +PSHRALA+FRGR  +
Sbjct: 184 LGNLRDALWDGGVLISTVAEGKSEAGA---KFSDYFDYREAIKAIPSHRALALFRGRNEN 240

Query: 244 ILDAKLVLPVEPEPGKPSVAEG------RIALHLGWSHAGRPADDLLRKCVAWTWRVKLA 297
           +L+ KL+ P E      +V++G      RIA         RPAD  L + V W WR+K+ 
Sbjct: 241 VLNLKLLTPDEAARPDGTVSQGPGEFEARIARRFSVRDLKRPADSWLAETVRWAWRIKIH 300

Query: 298 LSTERDLFTRLREDAEKVAIKVFADNLRDLLLAAPAGPRVVMGLDPGIRTGVKVAVVDST 357
           L  E +L +RLRE AE  AI VFA NLR LLL APAG R  +GLDPGIRTGVKVAV D+T
Sbjct: 301 LHLELELMSRLREAAEAEAINVFARNLRALLLQAPAGARNCIGLDPGIRTGVKVAVTDAT 360

Query: 358 GKLVETATVFPHEPRKDWEGSLHTLGKLCAKHGVNLIAIGNGTASRETDKLAADLIKLLA 417
           GK+VETAT++PH+PR DW+GS+  +  L  KHG+ L+AIGNGTASRETD+L  D++K   
Sbjct: 361 GKVVETATIYPHQPRNDWQGSVAAIAHLARKHGIKLVAIGNGTASRETDRLVIDVMKR-- 418

Query: 418 KMAAQAGAPEIQVDKVVVSEAGASVYSASEFASQEMPDVDVSLRGAASIARRLQDPLAEL 477
                   P++ ++K+VVSEAGASVYSASE A++E PD+DVSLRGA SIARRLQDPLAEL
Sbjct: 419 -------HPDLGLEKLVVSEAGASVYSASELAAKEFPDLDVSLRGAVSIARRLQDPLAEL 471

Query: 478 VKIDPKSIGVGQYQHDVNQSELARTLQAVVEDCVNSVGVDLNTASVPLLSRVSGLSASVA 537
           VKIDPK+IGVGQYQHDV+Q +L R+L AVVEDCVN+VGV++NTAS PLL+RV+GLS +VA
Sbjct: 472 VKIDPKAIGVGQYQHDVDQVKLGRSLDAVVEDCVNAVGVEVNTASAPLLARVAGLSPTVA 531

Query: 538 KAVVRWRESNGAFATRKQLLDVTGFGPKAFEQSAGFLRIRGGTDPLDVTGVHPETYPLVE 597
           + VV +R+  G FA+R+ L  V   G KAFEQ+AGFLR+ GG +PLD + VHPE YP+VE
Sbjct: 532 RNVVEFRDRFGPFASREALKQVERLGAKAFEQAAGFLRVVGGVNPLDSSAVHPEAYPVVE 591

Query: 598 QIIVKTGKPIAELMGRAEMLKTLKPELFANEKFGVITVKDILGELEKPGRDPRPDFKVAR 657
           +I+  TG+P+  L+G +  +++L P+ F +E+FG  TVKDIL ELEKPGRDPRP+FK A 
Sbjct: 592 RIVKATGRPVKALIGDSSFIRSLDPKEFTDERFGEPTVKDILKELEKPGRDPRPEFKTAA 651

Query: 658 FNDGVDDIADLKEGMILEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVNDAREVVKT 717
           F +GV+ + DLK GMILEG V+NV  FGAFVD+GVHQDGLVH+S L+ +FV D  EVVK 
Sbjct: 652 FKEGVETLNDLKPGMILEGVVTNVTNFGAFVDIGVHQDGLVHISVLADRFVKDPHEVVKP 711

Query: 718 GDIVKVKVMEVDVARKRIGLSMKLDA--APARR-DGPRDNRFEGAGRGQQQQGRRDNSPQ 774
           GD+VKVKV+EVD+ R RI LSM++DA  APAR+ D PR +    A + QQ+Q     + +
Sbjct: 712 GDLVKVKVLEVDIKRSRIALSMRMDAQPAPARKDDAPRRDERRPAPQAQQRQPAAPKADE 771

Query: 775 PAGQMASAFAK 785
             G  A+AFAK
Sbjct: 772 GGGAFAAAFAK 782