Pairwise Alignments

Query, 791 a.a., Transcription accessory protein (S1 RNA-binding domain) from Variovorax sp. SCN45

Subject, 773 a.a., Transcriptional accessory protein from Kangiella aquimarina DSM 16071

 Score =  800 bits (2067), Expect = 0.0
 Identities = 426/794 (53%), Positives = 557/794 (70%), Gaps = 36/794 (4%)

Query: 1   MQKIIRQLAAEIKVGENQVKAAVELLDGGATVPFIARYRKEATDGLDDTQLRELEARLSY 60
           M +I +Q+A E+ V   QV+AAV LLD G+TVPFIARYRKE T  LDDTQLR+LE RL Y
Sbjct: 1   MLQINQQIAQELNVRPQQVEAAVRLLDEGSTVPFIARYRKEVTGALDDTQLRDLEQRLGY 60

Query: 61  LRELEDRRVAVLKAIDEQGKLTPELRAAIEFAPTKQELEDIYLPFKQKRRTKGQIAREFG 120
           LRELEDRR A+LK+I+EQ KLTPEL+++IE A TK ELED+YLP+K KRRTK QIARE G
Sbjct: 61  LRELEDRRAAILKSIEEQEKLTPELKSSIEAATTKSELEDLYLPYKPKRRTKAQIAREAG 120

Query: 121 IEPLADKLLADPTLDPAVEAKAFLQPATTLDDGKPGPDFSTVPLVLDGVRDILSERWAED 180
           +EPLA  L  +PTLDP  EA+ +L P   ++  K           LDG R IL E +AE+
Sbjct: 121 LEPLAMDLWQNPTLDPEAEAEKYLNPEHKIETTKDA---------LDGARQILMEVFAEN 171

Query: 181 AALVQSLRVWLWNEGLLKSSLMSGKDENNADVAKFRDYFEYDEPIGRVPSHRALAVFRGR 240
           A L+++LR +LW+   + S ++ GK++      KF DYF++ E    +PSHR LA+ RGR
Sbjct: 172 ADLLKTLREYLWDNAYIHSKVIEGKEKEGI---KFSDYFDHSEAFKTIPSHRILALLRGR 228

Query: 241 ALDILDAKLV----LPVEPEPGKPSVAEGRIALHLGWSHAGRPADDLLRKCVAWTWRVKL 296
             +IL  ++V    L  +PE   P ++   +A H       R AD  L++ V WTW++KL
Sbjct: 229 NENILTLQMVSNQDLIKDPEASDPCLS--MVADHFNIKDQKRAADYWLQQVVLWTWKIKL 286

Query: 297 ALSTERDLFTRLREDAEKVAIKVFADNLRDLLLAAPAGPRVVMGLDPGIRTGVKVAVVDS 356
            L  E +L  ++RE  E  AI++FA NL DLL+AAPAG +  MGLDPG+RTG K  +VD 
Sbjct: 287 HLYLETELLAKVRELGETEAIRIFARNLNDLLMAAPAGAKTNMGLDPGLRTGTKAVIVDE 346

Query: 357 TGKLVETATVFPHEPRKDWEGSLHTLGKLCAKHGVNLIAIGNGTASRETDKLAADLIKLL 416
           TGKL+   T+FPH P+  W+ SL  L  LC  H V L++IGNGTASRETDKL A+L+K+ 
Sbjct: 347 TGKLLTQTTIFPHAPQNQWDQSLRKLQTLCEMHKVELVSIGNGTASRETDKLVAELMKM- 405

Query: 417 AKMAAQAGAPEIQVDKVVVSEAGASVYSASEFASQEMPDVDVSLRGAASIARRLQDPLAE 476
                   AP++++ K++VSEAGASVYSAS  A+QE PD+DVS RGA SIARRLQDPLAE
Sbjct: 406 --------APQLKLQKIMVSEAGASVYSASALAAQEFPDLDVSYRGAVSIARRLQDPLAE 457

Query: 477 LVKIDPKSIGVGQYQHDVNQSELARTLQAVVEDCVNSVGVDLNTASVPLLSRVSGLSASV 536
           LVKI+PKSIGVGQYQHDV+QS+LA++L  VVEDCVN+VGVDLN ASVPLL+RVSGLS ++
Sbjct: 458 LVKIEPKSIGVGQYQHDVSQSQLAKSLDGVVEDCVNAVGVDLNMASVPLLTRVSGLSKTI 517

Query: 537 AKAVVRWRESNGAFATRKQLLDVTGFGPKAFEQSAGFLRIRGGTDPLDVTGVHPETYPLV 596
           A+ +V WR++NG F  RKQLL+V   GPK +EQ+AGFLRIR G + LD + VHPE YP+V
Sbjct: 518 AQNIVNWRDTNGRFNNRKQLLEVERMGPKTYEQAAGFLRIRDGDNALDSSAVHPEAYPVV 577

Query: 597 EQIIVKTG-KPIAELMGRAEMLKTLKPELFANEKFGVITVKDILGELEKPGRDPRPDFKV 655
           E+++     + + +LMG  + L+ +K + F +E FG+ TV DIL EL+KPGRDPRP+FK+
Sbjct: 578 EKMMQSLELQDVHQLMGNTDKLRQIKAQEFTDETFGLHTVNDILKELDKPGRDPRPEFKM 637

Query: 656 ARFNDGVDDIADLKEGMILEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVNDAREVV 715
            RF +GV+ + DLK GM LEG V+NV  FGAF+D+GVHQDGLVH+S ++++F+ D  EVV
Sbjct: 638 VRFKEGVETLNDLKIGMELEGVVTNVTAFGAFIDVGVHQDGLVHLSMMANEFIKDPAEVV 697

Query: 716 KTGDIVKVKVMEVDVARKRIGLSM-----KLDAAPARRDGPRDNRFEGAGRGQQQQGRRD 770
           K GDIVKV V++VD+ RKRI LSM     +  + PA++   RD +    G  +  Q  + 
Sbjct: 698 KAGDIVKVWVLDVDMQRKRISLSMIGPDSQAASKPAQK---RDAQSHKKGNFKGNQSNKR 754

Query: 771 NSPQPAGQMASAFA 784
              +P G  A A A
Sbjct: 755 GQTKPQGAFADALA 768