Pairwise Alignments

Query, 791 a.a., Transcription accessory protein (S1 RNA-binding domain) from Variovorax sp. SCN45

Subject, 778 a.a., RNA-binding transcriptional accessory protein from Dickeya dianthicola ME23

 Score =  809 bits (2090), Expect = 0.0
 Identities = 445/792 (56%), Positives = 551/792 (69%), Gaps = 31/792 (3%)

Query: 8   LAAEIKVGENQVKAAVELLDGGATVPFIARYRKEATDGLDDTQLRELEARLSYLRELEDR 67
           +A+E++    QV AA++LLD G TVPFIARYRKE T GLDDTQLR+LE+RLSYLRELE+R
Sbjct: 9   IASELQARTEQVTAAIQLLDEGNTVPFIARYRKEVTGGLDDTQLRQLESRLSYLRELEER 68

Query: 68  RVAVLKAIDEQGKLTPELRAAIEFAPTKQELEDIYLPFKQKRRTKGQIAREFGIEPLADK 127
           R  +LK+I+EQGKLT  L  +I    +K ELED+YLP+K KRRT+GQIA E G+EPLAD 
Sbjct: 69  RQTILKSIEEQGKLTDALATSINTTLSKTELEDLYLPYKPKRRTRGQIAIEAGLEPLADS 128

Query: 128 LLADPTLDPAVEAKAFLQPATTLDDGKPGPDFSTVPLVLDGVRDILSERWAEDAALVQSL 187
           L  DP+  P + A A++     + D         V   LDG R IL ER+AEDAAL+  +
Sbjct: 129 LWNDPSQTPELVANAYVNADNGVAD---------VKAALDGARYILMERFAEDAALLAKV 179

Query: 188 RVWLWNEGLLKSSLMSGKDENNADVAKFRDYFEYDEPIGRVPSHRALAVFRGRALDILDA 247
           R +LW    L S ++ GK+E   D AKFRDYF++ EP+ +VPSHRALA+FRGR   +L  
Sbjct: 180 RDYLWKNAHLVSRVVEGKEE---DGAKFRDYFDHREPLSQVPSHRALAMFRGRNEGMLQL 236

Query: 248 KLVL-PVEPEPGKPSVAEGRIALHLGWSHAGRPADDLLRKCVAWTWRVKLALSTERDLFT 306
            L   P   EP K S  E  I  HL       PAD   R  V WTWR+K+ L  E +L  
Sbjct: 237 SLNADPQFDEPPKESHCEQIIVDHLRLRLGNAPADGWRRAVVNWTWRIKVLLHLETELMG 296

Query: 307 RLREDAEKVAIKVFADNLRDLLLAAPAGPRVVMGLDPGIRTGVKVAVVDSTGKLVETATV 366
            +RE AE  AI VFA NL DLL+AAPAG R  MGLDPG+RTGVKVAVVD+TGKLV T T+
Sbjct: 297 SVREKAEDEAINVFARNLHDLLMAAPAGMRATMGLDPGLRTGVKVAVVDATGKLVATDTI 356

Query: 367 FPHEPRKDWEGSLHTLGKLCAKHGVNLIAIGNGTASRETDKLAADLIKLLAKMAAQAGAP 426
           +PH  +     ++  +  LC KH V L+AIGNGTASRET++   D          Q   P
Sbjct: 357 YPHTGQAAKAATV--VAALCIKHQVELVAIGNGTASRETERFFLD---------TQKQFP 405

Query: 427 EIQVDKVVVSEAGASVYSASEFASQEMPDVDVSLRGAASIARRLQDPLAELVKIDPKSIG 486
           +++  KV+VSEAGASVYSASE A+ E P +DVSLRGA SIARRLQDPL+ELVKIDPKSIG
Sbjct: 406 DVKAQKVIVSEAGASVYSASELAALEFPGLDVSLRGAVSIARRLQDPLSELVKIDPKSIG 465

Query: 487 VGQYQHDVNQSELARTLQAVVEDCVNSVGVDLNTASVPLLSRVSGLSASVAKAVVRWRES 546
           VGQYQHDV+Q++LA+ L A+VEDCVN+VGVDLNTASVPLL+RV+GL+  +A+ +V WR+ 
Sbjct: 466 VGQYQHDVSQTQLAKKLDAIVEDCVNAVGVDLNTASVPLLTRVAGLTRLMAQNIVSWRDE 525

Query: 547 NGAFATRKQLLDVTGFGPKAFEQSAGFLRIRGGTDPLDVTGVHPETYPLVEQIIVKTGKP 606
           NG F  R QLL V+  GPKAFEQ AGFLRI  G +PLD + VHPETYP+VE+I+  T + 
Sbjct: 526 NGRFNNRDQLLKVSRLGPKAFEQCAGFLRINHGDNPLDASTVHPETYPVVERILAATEQK 585

Query: 607 IAELMGRAEMLKTLKPELFANEKFGVITVKDILGELEKPGRDPRPDFKVARFNDGVDDIA 666
           + +LMG +  L+TLKP  F +++FGV TV DI+ ELEKPGRDPRP+FK A F DGV+ + 
Sbjct: 586 LQDLMGNSSALRTLKPASFTDDRFGVPTVTDIIKELEKPGRDPRPEFKTASFADGVETLN 645

Query: 667 DLKEGMILEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVNDAREVVKTGDIVKVKVM 726
           DL  GMILEG V+NV  FGAFVD+GVHQDGLVH+S L+ +FV D  +VVK GDIVKVKV+
Sbjct: 646 DLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSLADRFVEDPHQVVKAGDIVKVKVL 705

Query: 727 EVDVARKRIGLSMKLDAAP----ARRDGPRD-NRFEGAGRGQQ--QQGRRDNSPQPAGQM 779
           EVD+ RKRI L+M+LD  P    +RRDG R+ +    A R  Q   + R   S  PAG  
Sbjct: 706 EVDLQRKRIALTMRLDEQPGEGNSRRDGGRERDNGNKASRPPQAGNKARPRQSSTPAGNS 765

Query: 780 ASAFAKLQGLRK 791
           A + A     +K
Sbjct: 766 AMSDALAAAFKK 777