Pairwise Alignments

Query, 791 a.a., Transcription accessory protein (S1 RNA-binding domain) from Variovorax sp. SCN45

Subject, 750 a.a., Transcriptional accessory protein from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  592 bits (1525), Expect = e-173
 Identities = 341/784 (43%), Positives = 486/784 (61%), Gaps = 47/784 (5%)

Query: 7   QLAAEIKVGENQVKAAVELLDGGATVPFIARYRKEATDGLDDTQLRELEARLSYLRELED 66
           ++A E+ + + QV   +ELLD GATVPFI+RYRKE T  LD+ Q+  +  R+  LR+L+ 
Sbjct: 8   KIAEELNIRQKQVSDTIELLDEGATVPFISRYRKEVTGSLDEVQVAAIRDRVQQLRDLDK 67

Query: 67  RRVAVLKAIDEQGKLTPELRAAIEFAPTKQELEDIYLPFKQKRRTKGQIAREFGIEPLAD 126
           RR A+LK+I EQ KLTPEL   I  A T   LED+YLP+K KRRTK  IARE G+EPLA+
Sbjct: 68  RREAILKSIKEQEKLTPELEGKINDAETMAALEDLYLPYKPKRRTKATIAREKGLEPLAE 127

Query: 127 KLLADPTLDPAVEAKAFLQPATTLDDGKPGPDFSTVPLVLDGVRDILSERWAEDAALVQS 186
           K+    + D   EAKA+      +D+ K   +  +    L G RDI++E   E+A L + 
Sbjct: 128 KIFGQESCDLEEEAKAY------IDEEK---EVGSTEEALQGARDIIAEWVNENAELRKK 178

Query: 187 LRVWLWNEGLLKSSLMSGKDENNADVAKFRDYFEYDEPIGRVPSHRALAVFRGRALDILD 246
           +R     EG   S ++ GK+E   +  K++DYFE+ EPI   PSHR LA+ RG      +
Sbjct: 179 MRDLFIEEGKFVSKVIPGKEE---EAIKYKDYFEWSEPIKTAPSHRVLAMRRG------E 229

Query: 247 AKLVLPVEPEPGKPSVAEGRIALHLGWSHAGRPADDLLRKCVAWTWR--VKLALSTERDL 304
            +L L ++     P   +    +      A   + + ++  +   ++  +K ++ TE  L
Sbjct: 230 KELFLMLD---SCPEELDALALMEKMTVTAQNTSSEQVKLAIKDCYKRLMKPSMETEVRL 286

Query: 305 FTRLREDAEKVAIKVFADNLRDLLLAAPAGPRVVMGLDPGIRTGVKVAVVDSTGKLVETA 364
           +T+ + D +  AIKVFA+NLR LLL AP G + VM +DPG RTG K+A +   G+++   
Sbjct: 287 YTKKKADED--AIKVFAENLRQLLLGAPLGEKSVMAIDPGFRTGCKLACLGPQGQVLHYD 344

Query: 365 TVFPHEPRKDWEGSLHTLGKLCAKHGVNLIAIGNGTASRETDKLAADLIKLLAKMAAQAG 424
            ++P+EP++    S   +  L  KH V  IAIGNGTASRET++    +           G
Sbjct: 345 AIYPNEPQRKKAESAALVKHLVEKHQVEAIAIGNGTASRETEQFFKSI-----------G 393

Query: 425 APEIQVDKVVVSEAGASVYSASEFASQEMPDVDVSLRGAASIARRLQDPLAELVKIDPKS 484
            P+  V  V+V+E+GAS+YSASE A +E PD+D+++RGA SI RRL DPLAELVKIDPKS
Sbjct: 394 LPQ-NVLIVMVNESGASIYSASEVAREEFPDLDLTIRGAVSIGRRLMDPLAELVKIDPKS 452

Query: 485 IGVGQYQHDVNQSELARTLQAVVEDCVNSVGVDLNTASVPLLSRVSGLSASVAKAVVRWR 544
           IGVGQYQHDV+QS L  +L   V  CVN VGV++NTAS  LL+ VSGL  ++A+ +V +R
Sbjct: 453 IGVGQYQHDVDQSALKNSLDDTVMSCVNGVGVEVNTASKQLLTYVSGLGPALAQNIVNFR 512

Query: 545 ESNGAFATRKQLLDVTGFGPKAFEQSAGFLRIRGGTDPLDVTGVHPETYPLVEQIIVKTG 604
             NG F +R+ +  V   G KA+EQ+AGFLRI+   +PLD + VHPE Y LV+Q+    G
Sbjct: 513 NENGPFKSREDIRKVPRLGDKAYEQAAGFLRIQNAPNPLDRSAVHPERYDLVQQMATDLG 572

Query: 605 KPIAELMGRAEMLKTLKPELFANEKFGVITVKDILGELEKPGRDPRPDFKVARFNDGVDD 664
             +++L+   E+   +  + +  E  G+ T++DI+ EL KPGRDPR  F+V  F +GV++
Sbjct: 573 SNVSDLIKDEELRSKVVLKNYVTETVGLPTLQDIMEELAKPGRDPRETFEVFSFQEGVNE 632

Query: 665 IADLKEGMILEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVNDAREVVKTGDIVKVK 724
           + DLK GM L G ++N+  FGAFVD+GVHQDGLVH+S L+ ++++D  EVV     V+V 
Sbjct: 633 MKDLKVGMKLPGIITNITNFGAFVDVGVHQDGLVHLSHLADRYISDPNEVVTVNQKVEVT 692

Query: 725 VMEVDVARKRIGLSMKLDAAPARRDGPRDNRFEGAGRGQQQQGRRDNSPQPAGQMASAFA 784
           VMEVD+ RKRIGLSMK          P   R +G   G +++ R++  P+  G +A+  A
Sbjct: 693 VMEVDLNRKRIGLSMK--------SAPFAERSKGKSGGAKRERRKEKEPE--GDLAAKLA 742

Query: 785 KLQG 788
            L+G
Sbjct: 743 MLKG 746