Pairwise Alignments

Query, 791 a.a., Transcription accessory protein (S1 RNA-binding domain) from Variovorax sp. SCN45

Subject, 566 a.a., 30S ribosomal protein S1 from Agrobacterium fabrum C58

 Score = 63.9 bits (154), Expect = 2e-14
 Identities = 30/76 (39%), Positives = 50/76 (65%), Gaps = 1/76 (1%)

Query: 665 IADLKEGMILEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVNDAREVVKTGDIVKVK 724
           + +L+EG +++G V N+  +GAFVDLG   DGL+HV+ ++ + VN   E++  G  VKV+
Sbjct: 192 VQNLEEGQVVDGVVKNITDYGAFVDLG-GIDGLLHVTDMAWRRVNHPSEILNIGQQVKVQ 250

Query: 725 VMEVDVARKRIGLSMK 740
           ++ ++    RI L MK
Sbjct: 251 IIRINQETHRISLGMK 266



 Score = 53.1 bits (126), Expect = 4e-11
 Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 3/82 (3%)

Query: 660 DGVDDIADLKEGMILEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVN-DAREVVKTG 718
           DG+   A    G  + GTV+N+  +GAFV+L    +GL+H+S++S    N    +++ T 
Sbjct: 274 DGIS--AKYPVGKKISGTVTNITDYGAFVELEPGIEGLIHISEMSWTKKNVHPGKILSTS 331

Query: 719 DIVKVKVMEVDVARKRIGLSMK 740
             V V V+EVD +++RI L +K
Sbjct: 332 QEVDVVVLEVDPSKRRISLGLK 353



 Score = 50.8 bits (120), Expect = 2e-10
 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 1/71 (1%)

Query: 671 GMILEGTVSNVAQFGAFVDLGVHQDGLVHVSQLS-HKFVNDAREVVKTGDIVKVKVMEVD 729
           G  +EG V N  +FG F+ L    DG+VH+S L  ++      E    GD+VK  V++VD
Sbjct: 370 GTEVEGEVKNKTEFGLFIGLEGDVDGMVHLSDLDWNRPGEQVIEEFNKGDVVKAVVLDVD 429

Query: 730 VARKRIGLSMK 740
           V ++RI L +K
Sbjct: 430 VEKERISLGIK 440