Pairwise Alignments

Query, 306 a.a., Pseudouridine synthase (EC 4.2.1.70), PA2043 type from Variovorax sp. SCN45

Subject, 324 a.a., 23S rRNA pseudouridine(1911/1915/1917) synthase RluD from Rhodanobacter sp000427505 FW510-R12

 Score = 87.8 bits (216), Expect = 3e-22
 Identities = 82/283 (28%), Positives = 122/283 (43%), Gaps = 23/283 (8%)

Query: 36  LIERFPAITRE---AWLERIAANDVIDEHHVPVTAERRYQSPLRVYYYRSLDNEVHIPFE 92
           L E FP  +R     W++    +  +     P    +  +   RV     L+NEV    E
Sbjct: 23  LAEMFPDYSRSRLSGWIK----SGAVTLDGAPAPPRQLLRGGERVQLRVELENEVASAAE 78

Query: 93  E---QVVFRDDQLLVVDKPPFLPVTP----TGKYLQQSLLVRLKRKLELDDLVPLHRIDR 145
           +    +V  D+ LLV+DKP  L V P        L  +LL    R  EL     +HR+D+
Sbjct: 79  DIALAIVHEDEHLLVLDKPAGLVVHPGAGNPAGTLLNALLHHDPRLAELPRAGIVHRLDK 138

Query: 146 STSGLVLFSVRPETRGAYQAMFPERRIDKHYEAVVPWQDGVSSVPATYRSRLVDDEHFMR 205
            TSGL++ +    T  A   +     +++ YEAVV               R + D     
Sbjct: 139 DTSGLMVVARTLPTYTALVDLLSRHEVERQYEAVVLGTLVAGGTVDAPIGRSLGDRLRQA 198

Query: 206 VREEPGEPNSETHIELLAAQGGHALLKLSPVTGRKHQLRVHCQALGMPIVNDPIY--PVL 263
           VR+E     + TH  +      H+LL+    TGR HQ+RVH   +  P+V DP+Y   + 
Sbjct: 199 VRDEEDGKRAVTHYRVRERFRAHSLLQCRLETGRTHQIRVHLAHISHPLVGDPLYGGGLK 258

Query: 264 LPENTD-DFDKPLQ------LLAKSVAFIDPITGEQRRFTSPR 299
           LP+    +    L+      L A+ +AFI P TGE   F + R
Sbjct: 259 LPKGASAELAAALRGFRRQALHAEQLAFIHPATGEAMSFGAER 301