Pairwise Alignments

Query, 306 a.a., Pseudouridine synthase (EC 4.2.1.70), PA2043 type from Variovorax sp. SCN45

Subject, 211 a.a., 23S rRNA (746) and tRNA (32) pseudouridine synthase from Pseudomonas putida KT2440

 Score = 82.4 bits (202), Expect = 8e-21
 Identities = 55/207 (26%), Positives = 99/207 (47%), Gaps = 7/207 (3%)

Query: 94  QVVFRDDQLLVVDKPPFLPVTPTGKYLQQSLLVRLKRKLELDDLVPLHRIDRSTSGLVLF 153
           Q++F D  +LV++KP  L   P      +  L+   ++    D + +HR+D  TSG++L 
Sbjct: 7   QILFEDAAILVINKPTLLLSVPGRAEDNKDCLITRLQENGYPDALIVHRLDWETSGIILL 66

Query: 154 SVRPETRGAYQAMFPERRIDKHYEAVVPWQDGVSSVPATYRSRLVDDEHFMRVREEPGEP 213
           +   ++       F +R  +K Y A+   Q  + S       R         V +     
Sbjct: 67  ARDADSHRELSRQFHDRETEKAYTALCWGQPALDSGSIDLPLRYDPPTKPRHVVDHEQGK 126

Query: 214 NSETHIELLAAQGGHALLKLSPVTGRKHQLRVHCQALGMPIVNDPIY--PVLLPENTDDF 271
           ++ T   ++   G H  ++L+P+TGR HQLRVH  ++G P++ D +Y  P  L  +    
Sbjct: 127 HALTFWRIVERCGDHCRVELTPITGRSHQLRVHMLSIGHPLLGDRLYANPQALAAH---- 182

Query: 272 DKPLQLLAKSVAFIDPITGEQRRFTSP 298
            + L L A  ++F  P++G++ +F  P
Sbjct: 183 -ERLCLHASMLSFTHPVSGQRLKFECP 208