Pairwise Alignments

Query, 306 a.a., Pseudouridine synthase (EC 4.2.1.70), PA2043 type from Variovorax sp. SCN45

Subject, 222 a.a., ribosomal large subunit pseudouridine synthase A from Agrobacterium fabrum C58

 Score = 85.9 bits (211), Expect = 8e-22
 Identities = 61/172 (35%), Positives = 88/172 (51%), Gaps = 12/172 (6%)

Query: 95  VVFRDDQLLVVDKPP-FLPVTPTGKYLQQSLLVRLKRKLELDDLVPLHRIDRSTSGLVLF 153
           +V RDD LLV+DKP   L V      L  SL+ R+++  +    + ++R+D+ TSG+VL 
Sbjct: 20  IVHRDDDLLVLDKPSGLLSVPGRDPALSDSLMTRVQK--QFPKALMINRLDKDTSGIVLM 77

Query: 154 SVRPETRGAYQAMFPERRIDKHYEAVVPW-----QDGVSSVPATYRSRLVDDEHFMRVRE 208
           S+  +   A  A F +R   K Y A+V W     ++G   +P        D++   RV  
Sbjct: 78  SLNRKAHAAIAAQFEKRETRKSYVAIV-WGTVAGEEGEVDLPLAIDP---DNKPRHRVDH 133

Query: 209 EPGEPNSETHIELLAAQGGHALLKLSPVTGRKHQLRVHCQALGMPIVNDPIY 260
           E G+P       L         L L+P+TGR HQLRVH +ALG PI+ D  Y
Sbjct: 134 ENGKPAQSLWRVLERLPLPATRLALTPLTGRTHQLRVHMKALGHPILGDEFY 185