Pairwise Alignments

Query, 306 a.a., Pseudouridine synthase (EC 4.2.1.70), PA2043 type from Variovorax sp. SCN45

Subject, 329 a.a., ribosomal large subunit pseudouridine synthase C from Agrobacterium fabrum C58

 Score = 65.1 bits (157), Expect = 2e-15
 Identities = 66/218 (30%), Positives = 102/218 (46%), Gaps = 30/218 (13%)

Query: 95  VVFRDDQLLVVDKPPFLPV---TPTGKYLQQSLLVRLKRKLELDDLVPLHRIDRSTSGLV 151
           ++  DD++LV +KP  + V   +   +++   L      K E   LV  HR+DR TSG++
Sbjct: 96  LLHEDDKVLVFNKPAGIAVQGGSGVNRHIDGLLEAWTSPKGEKPRLV--HRLDRDTSGVL 153

Query: 152 LFSVRPETRGAYQ---AMFPERRIDKHYEAVVPWQDGVSSVPATYRSRL--------VDD 200
           + +    TRGA Q   A F ER   K Y A+V        VP  ++ ++          D
Sbjct: 154 VVA---RTRGAAQKLTAAFRERDTKKTYWALV------RGVPRKHQDKISTWLVKEQTPD 204

Query: 201 EHFMRVRE--EPGEPNSETHIELL-AAQGGHALLKLSPVTGRKHQLRVHCQALGMPIVND 257
              MR+ +  E G  ++ ++  ++  A    A L++ P TGR HQLRVH   +G PI+ D
Sbjct: 205 GDRMRIAKHGEEGADHAISYYRVIDTAAQNLAWLEMEPYTGRTHQLRVHALHMGHPIIGD 264

Query: 258 PIYPVLLP--ENTDDFDKPLQLLAKSVAFIDPITGEQR 293
           P Y +  P  +      K L L A+ +    P  G  R
Sbjct: 265 PKYYIDDPNWDFPGGVQKRLHLHARHIDIPHPNGGRLR 302