Pairwise Alignments

Query, 268 a.a., Hydroxymethylpyrimidine ABC transporter, transmembrane component from Variovorax sp. SCN45

Subject, 256 a.a., Putative aliphatic sulfonates transport permease protein SsuC from Xanthobacter sp. DMC5

 Score = 89.0 bits (219), Expect = 9e-23
 Identities = 66/245 (26%), Positives = 111/245 (45%), Gaps = 7/245 (2%)

Query: 20  VLIGVVLVALWQWMVVAMELPAYLVPSPYLMMQTL--VTDWAPLGNALLVTLKITVLSFL 77
           +L  + L+ LW+       + A   P P  ++ T   +     L   LL +L+   L  L
Sbjct: 15  LLTPLALLGLWEAAARMGLVDARFFPPPSSIVHTFGALVASGELWTNLLASLRRLFLGML 74

Query: 78  LATVAGVLISFLFVQSKRIETALFPYAVLLQVTPIVAVAPLIIIWVKNPVAAMTVCAALV 137
           L  V  + +      SK +  A+ P        P  A+ PL+++       +  V  AL 
Sbjct: 75  LGGVPALFLGLAMGISKPLRAAIDPLISATYPIPKSAILPLVLLIFGLGEMSKVVMVALG 134

Query: 138 ALFPIISNTTLGLRSIDPDLQSYFKLNRATRWQQLVRLRIPSALPYFFGGLRISSGLALI 197
           A +PI+ NT +G+ +ID          RA+RWQ    + +P ALP    G++++ G+ LI
Sbjct: 135 AFYPILINTVMGVANIDKIYLDVGHNYRASRWQVFRTIALPGALPSIMAGVKLAMGMGLI 194

Query: 198 GAVVAEFVAGTGGSGAGLAYQILQAGFQLNIPRMFAALLLISLTGVALFVLMAWLTKVAL 257
              ++E VA + G G    Y I  A   L +  M+  LL+I+L G    V++  + ++ +
Sbjct: 195 LIAISEMVAASDGIG----YMIWNAWQVLTVDTMYVGLLVIALLGFVFSVILDEIERMLI 250

Query: 258 GSWHA 262
             W A
Sbjct: 251 -PWKA 254