Pairwise Alignments

Query, 342 a.a., ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate) from Variovorax sp. SCN45

Subject, 318 a.a., Alkanesulfonate ABC transporter substrate-binding protein SsuA from Variovorax sp. SCN45

 Score =  125 bits (313), Expect = 2e-33
 Identities = 93/308 (30%), Positives = 147/308 (47%), Gaps = 18/308 (5%)

Query: 18  RRRLLQAAAALGAAASAGWTRAAAPATDLSGVTLRVGTYKGLWRPLLTASGQ-----ANT 72
           RRRL+Q  AA  A  S     A APA        R+G  KG +  LL   G      A  
Sbjct: 8   RRRLIQGVAAAVALPSFA-ALAQAPARQF-----RIGNQKG-YLTLLKGRGTLEKRLAPL 60

Query: 73  PYKIDWRELNNGVLHIEAINGDALDLGSGSEIPPVFAARQKSSVRLVAVTHEDLNNQATL 132
              + W E   G + +EA+N  ++D G   E PP+FA    + +  V  T     ++A L
Sbjct: 61  GVSVKWTEFTAGPVQLEALNVGSIDFGDVGEAPPIFAQAAGAPLAYVGATVVRPQSEAVL 120

Query: 133 ARKDAPIRTIADFKGKRVGYVRATTSHYYLAKQLAEAGLSFSDIQAVSLTPSDGLSAFAR 192
             K + I+T+A+ KGK++   + +  HY++ K   + GLS++D+  V L P+D  +AF +
Sbjct: 121 VPKASAIKTVAELKGKKIALNKGSNVHYFIVKLFEKHGLSYADLNLVYLPPADARAAFEK 180

Query: 193 GDLDAWAIYGYNGQLARIQYGARVIKTGVGYLSGNFPIYANPRALDDAPRRA-ALADLLQ 251
           G +DAW I+      A     AR++    G + GN   Y +  +LD   + A  LA  ++
Sbjct: 181 GSVDAWVIWDPFLAAAEKSLDARILADATGVV-GNRAYYFS--SLDYVAKNADVLAIAIE 237

Query: 252 RLQRAFAWSNGNFLTYARAQSAETRVPVGDIVELFNGRSSDYSLGPVSDAVVRSHQDVAD 311
            L +   W   N    A   +A   +P   + EL   RS+ Y   P++ A++   Q +AD
Sbjct: 238 ELNKIDVWGAANKAELAGELAALWGLP-KPVAELSVNRSA-YGTTPITKAILAEQQKIAD 295

Query: 312 TFLKIGVL 319
           TF  + ++
Sbjct: 296 TFFDLKLI 303