Pairwise Alignments

Query, 342 a.a., ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate) from Variovorax sp. SCN45

Subject, 328 a.a., putative ABC transporter, periplasmic substrate-binding protein from Pseudomonas putida KT2440

 Score = 92.4 bits (228), Expect = 1e-23
 Identities = 84/308 (27%), Positives = 134/308 (43%), Gaps = 14/308 (4%)

Query: 18  RRRLLQAAAALGAAASAGWTRAAAPATDLSGVTLRVGTYKGLWRPLLTASGQ-----ANT 72
           RR L+    A  A+A   W+ A A        TLR+G  K     +L  SG      A  
Sbjct: 12  RRLLIGGLLASVASALLPWSEAIAD----DARTLRIGYQKFNSINILKGSGALEKALAPQ 67

Query: 73  PYKIDWRELNNGVLHIEAINGDALDLGSGSEIPPVFAARQKSSVRLVAVTHEDLNNQATL 132
             K+ W E   G   +EA++  A+DLG  ++ P VFA      V  +A           +
Sbjct: 68  GVKVSWHEFAAGPQLLEALSTGAIDLGHAADAPSVFAQAAGKPVVYLAAEQPYPRGIGLV 127

Query: 133 ARKDAPIRTIADFKGKRVGYVRATTSHYYLAKQLAEAGLSFSDI-QAVSLTPSDGLSAFA 191
            R+   + ++ D KGKRV   R   + Y LA  L +AGLS+ DI  A     +D ++A  
Sbjct: 128 VREQDHLASVQDLKGKRVATGRGWNAQYLLAVALQQAGLSYKDITPAYVNNAADAVAALQ 187

Query: 192 RGDLDAWAIYGYNGQLARIQYGARVIKTGVGYLSGNFPIYANPRALDDAPRRAALADLLQ 251
            G + A  ++      A  Q G + ++ G G LS N   Y +  +  D   RA L     
Sbjct: 188 SGSVQAVTLWDPFLAAAESQPGLKNLRDGSG-LSNNRTFYLSTASFAD-QHRALLKTFFA 245

Query: 252 RLQRAFAWSNGNFLTYARAQSAETRVPVGDIVELFNGRSSDYSLGPVSDAVVRSHQDVAD 311
            L +   W+N      A   + +  +    ++E+ + R  +Y+   ++  +V   Q +AD
Sbjct: 246 ELGKVSQWANAKPAEVAALLAPQLGIST-QVLEVASER-RNYNAVAITPQIVAEQQKLAD 303

Query: 312 TFLKIGVL 319
           TF  +G++
Sbjct: 304 TFQGLGLI 311