Pairwise Alignments

Query, 342 a.a., ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate) from Variovorax sp. SCN45

Subject, 318 a.a., putative Periplasmic aliphatic sulfonate-binding protein from Pseudomonas putida KT2440

 Score =  104 bits (259), Expect = 3e-27
 Identities = 90/300 (30%), Positives = 132/300 (44%), Gaps = 24/300 (8%)

Query: 39  AAAPATDLSGVTLRVGTYKG-LWRPLLTASGQANTPY-----KIDWRELNNGVLHIEAIN 92
           A  P+   +  TLR+G  K      LL A G           ++ W E  +G+  +EA+N
Sbjct: 17  ALLPSLASAEQTLRIGYQKSSTLLTLLKARGTLEQRLQAEGIRVTWHEFPSGLPLLEALN 76

Query: 93  GDALDLGSG-SEIPPVFAARQKSSVRLVAVTHEDLNNQATLARKDAPIRTIADFKGKRVG 151
              +DL +  ++  PVF     + +   A        QA L   D+P++T+AD KGKRV 
Sbjct: 77  LGNVDLSADVADTVPVFTQAAGAKLTYFAREAPSPTAQAILVPADSPLKTLADLKGKRVA 136

Query: 152 YVRATTSHYYLAKQLAEAGLSFSDIQAVSLTPSDGLSAFARGDLDAWAIYGYNGQLARIQ 211
             +A  SHY L + LA+AGL+F DI    L P+DG +AF    +DAW  +      A+ Q
Sbjct: 137 VTKAAGSHYLLIQALAKAGLTFKDITPAYLIPADGRAAFENHKVDAWVTWDPYVASAQRQ 196

Query: 212 YGARVIKTGVG-------YLSGNFPIYANPRALDDAPRRAALADLLQRLQRAFAWSNGNF 264
             AR++  G         YL+G+    A+P  L           +   L+ A AW+  N 
Sbjct: 197 QNARILVDGSELASYQRYYLAGSDYAKAHPEVLQ---------QVYLALREAGAWTKANP 247

Query: 265 LTYARAQSAETRVPVGDIVELFNGRSSDYSLGPVSDAVVRSHQDVADTFLKIGVLDGPAD 324
              AR             V+  N R S Y + PV    +   Q +AD F + G+L    D
Sbjct: 248 EAAARILGPLWGNLDSATVQQANARRS-YDVQPVKLDNLAEQQRIADAFYREGLLPKAVD 306