Pairwise Alignments

Query, 280 a.a., ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 250 a.a., L-lysine and D-lysine ABC transporter, substrate-binding component (from data) from Pseudomonas putida KT2440

 Score = 73.2 bits (178), Expect = 5e-18
 Identities = 60/228 (26%), Positives = 107/228 (46%), Gaps = 16/228 (7%)

Query: 40  LQMSTNPTLPPQQFVDSKGELQGLNIELGRAVAKHLCLEPVFVRMDMPPMVPALQAGRFD 99
           L+ +T    PP  +VD+  +L G ++++  A+ + + +E   V  D   ++PAL A ++D
Sbjct: 24  LRFATEGAYPPFNYVDADNKLHGFDVDITHALCEQMKVECTLVAQDWEGIIPALMARKYD 83

Query: 100 VINTGLFWTEE-RSKLMFQVPYGQQSMSIYTVPNSKLVVNKFEDLSGHVVGIETGTYAER 158
            I   +  TEE R K+ F   Y +  +++    +SK + +   D  G+ VG      A+ 
Sbjct: 84  AIVASMIDTEERRKKIAFTDHYYRTPLTVAVAKDSK-IDSAQTDFVGYTVG------AQS 136

Query: 159 KSRESNAAMVAKGMAPIDFRTFATASETTAALRAGQLEAGINIDETAIA--FEERG---- 212
            S ++  A    G A  D + + T  E  A L AG+L+ G+  D+  +     + G    
Sbjct: 137 SSTQAIYAEDVYGKAGADVKLYPTMDEANADLAAGRLD-GVIADKFPLHEWMNKNGGDCC 195

Query: 213 -IVKIRASGLYGTDITLSFRDRAVAEAVAQALTDLKADGTYDKLFDKF 259
            I+   A       I +   D A+ + +  AL  + A+GTY K+  K+
Sbjct: 196 KILGDVADTKADAAIAVRKDDEALRQRLNTALQQIVANGTYQKIASKY 243