Pairwise Alignments

Query, 280 a.a., ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 250 a.a., L-arginine ABC transporter - periplasmic binding subunit from Pseudomonas putida KT2440

 Score = 69.7 bits (169), Expect = 6e-17
 Identities = 61/248 (24%), Positives = 111/248 (44%), Gaps = 19/248 (7%)

Query: 20  VLAQTCTPKVSAEHLTAPGKLQMSTNPTLPPQQFVDSKGELQGLNIELGRAVAKHLCLEP 79
           +LA   T  +SA  + A  KL+M      PP    D+ G + G + ++G A+   + +E 
Sbjct: 8   LLAAAATLVMSANAMAAE-KLRMGIEAAYPPFNNKDASGNVVGFDKDIGDALCAKMKVEC 66

Query: 80  VFVRMDMPPMVPALQAGRFDVINTGLFWTEERSKLM-FQVPYGQQSMSIYTVPNSKLVVN 138
             V  D   ++PAL A +FD + + L  T+ER + + F  PY    +      N     +
Sbjct: 67  SVVTSDWDGIIPALNAKKFDFLVSSLSITDERKQAVDFTNPYYSNKLQFIAPKNVDFKTD 126

Query: 139 KFEDLSGHVVGIETGTYAERKSRESNAAMVAKGMAPIDFRTFATASETTAALRAGQLEAG 198
           K E L G V+G +  T A           +      ++ + + T       L +G+++ G
Sbjct: 127 K-ESLKGKVIGTQRATLA--------GTYLEDNYPDVEIKLYDTQENAYLDLVSGRID-G 176

Query: 199 INIDETA----IAFEERGIVKIRASGLYGTD---ITLSFRDRAVAEAVAQALTDLKADGT 251
           I  D+      +  ++    + +   +  +D   I +   D  + + + +AL ++KADGT
Sbjct: 177 ILADKYVQYEWLKSKDGSNFEFKGEPVMDSDKIGIAVRKGDTKLRDDLNKALAEIKADGT 236

Query: 252 YDKLFDKF 259
           Y K+ DK+
Sbjct: 237 YKKINDKY 244