Pairwise Alignments

Query, 223 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 319 a.a., ABC transporter permease from Pseudomonas simiae WCS417

 Score =  135 bits (339), Expect = 1e-36
 Identities = 73/201 (36%), Positives = 123/201 (61%), Gaps = 1/201 (0%)

Query: 17  LLQGAVVTVQVTVLAFLLSSALGLALALMKLSPVRALSWAGSVIVNVIRGLPIIVQLFYI 76
           L+ G   T+ ++V++ +L   +GLA  L +LS    L    ++ V ++RG P++VQ+F  
Sbjct: 117 LMWGLWTTLWLSVVSGILGLIIGLATGLCRLSSNPTLRDLSTIYVELVRGTPLLVQIFIF 176

Query: 77  YFVLPEFGVQLTAFQAGVIGLGIAYSAYQAENFRAGIEAVDPGQREAAQAMGMRSALIMR 136
           YF +    + L+   AG+  L +   AY AE  RAG++++  GQ EAA+++G+ ++  MR
Sbjct: 177 YFFIGTV-LNLSREFAGIAALSLFTGAYVAEIVRAGVQSITRGQNEAARSLGLSASQSMR 235

Query: 137 RVILPQAFRIALPPYGNTLVMMLKDSSLVSTITVAEMTRAGQLIASSTFQNMTVYTLVAL 196
            V+LPQAF+  LPP     + ++KD+SLVS I + E+ ++G+ + +++F    +   VA 
Sbjct: 236 HVVLPQAFKRVLPPLAGQFISLVKDTSLVSVIAITELLKSGREVITTSFSPFEILFCVAG 295

Query: 197 LYLLMSLPLVYGLRRLEKRFA 217
           LYLL++LPL     RLE+R A
Sbjct: 296 LYLLINLPLSKMASRLERRLA 316