Pairwise Alignments

Query, 223 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 320 a.a., Amino acid ABC transporter, permease protein from Pseudomonas putida KT2440

 Score =  136 bits (342), Expect = 5e-37
 Identities = 76/201 (37%), Positives = 121/201 (60%), Gaps = 1/201 (0%)

Query: 17  LLQGAVVTVQVTVLAFLLSSALGLALALMKLSPVRALSWAGSVIVNVIRGLPIIVQLFYI 76
           L  G   T+ ++V++  L   +GL   L +LS    L    +V V ++RG P++VQ+F  
Sbjct: 118 LAWGLWTTLWISVVSGALGLVIGLFAGLCRLSNNPTLRDLSTVYVELVRGTPLLVQIFIF 177

Query: 77  YFVLPEFGVQLTAFQAGVIGLGIAYSAYQAENFRAGIEAVDPGQREAAQAMGMRSALIMR 136
           YF +    + L+   AGV  L +   AY AE  RAG++++  GQ EAA+++G+ +   MR
Sbjct: 178 YFFIGTV-LNLSREFAGVAALALFTGAYVAEIVRAGVQSIAKGQNEAARSLGLNAGQSMR 236

Query: 137 RVILPQAFRIALPPYGNTLVMMLKDSSLVSTITVAEMTRAGQLIASSTFQNMTVYTLVAL 196
            VILPQAF+  LPP     + ++KD+SLVS I + E+T++G+   +++F    ++  VA 
Sbjct: 237 HVILPQAFKRVLPPLAGQFISLVKDTSLVSVIAITELTKSGREAITTSFSTFEIWFCVAG 296

Query: 197 LYLLMSLPLVYGLRRLEKRFA 217
           LYLL++LPL +   RLE+R A
Sbjct: 297 LYLLINLPLSHIASRLERRLA 317