Pairwise Alignments

Query, 223 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 230 a.a., Amino acid ABC transporter, permease protein from Pseudomonas putida KT2440

 Score =  148 bits (374), Expect = 7e-41
 Identities = 83/218 (38%), Positives = 127/218 (58%), Gaps = 11/218 (5%)

Query: 13  FLPILLQGAVVTVQVTVLAFLLSSALGLALALMKLSPVRALSWAGSVIVNVIRGLPIIVQ 72
           F P ++ G ++TV++ + A LL   LGL  AL K SP + L W G     ++RG+P ++ 
Sbjct: 8   FGPAMMAGTLMTVKLALCALLLGLVLGLLGALAKTSPFKPLQWLGGFYSTLVRGVPELLW 67

Query: 73  LFYIYF-----------VLPEFGVQLTAFQAGVIGLGIAYSAYQAENFRAGIEAVDPGQR 121
           +  IYF            L   G++L+AF AGVI LG+ + AY  E FR  I A+  G R
Sbjct: 68  VLLIYFGTVGLMNSLGEALNMPGLELSAFAAGVIALGLCFGAYATEVFRGAILAIPKGHR 127

Query: 122 EAAQAMGMRSALIMRRVILPQAFRIALPPYGNTLVMMLKDSSLVSTITVAEMTRAGQLIA 181
           EA  A+G+    I+ R+ILPQ +RIALP  GN  ++++KD++LVS I + E+ R  Q+  
Sbjct: 128 EAGLALGLSKGRILSRIILPQMWRIALPGLGNLFMILMKDTALVSVIGLEEIMRHSQIGV 187

Query: 182 SSTFQNMTVYTLVALLYLLMSLPLVYGLRRLEKRFAAG 219
           + T +  T Y + A +YL +++  + G+  +EKR A G
Sbjct: 188 TVTKEPFTFYMVAACIYLGLTVLAMTGMHFMEKRAARG 225