Pairwise Alignments

Query, 433 a.a., TRAP dicarboxylate transporter, DctM subunit, unknown substrate 3 from Variovorax sp. SCN45

Subject, 426 a.a., D-glucuronate / D-galacturonate TRAP transporter, large permease component (from data) from Pseudomonas putida KT2440

 Score =  232 bits (591), Expect = 2e-65
 Identities = 145/430 (33%), Positives = 230/430 (53%), Gaps = 11/430 (2%)

Query: 4   DAVAVLGFVALFVLMLLRVPVGMAMGLVGVTGYSYLVGPGPALKLVGQTSMRTVTDYTFG 63
           +A  +LG  +  VL+L+ +PV  A+GL  + G  ++  P  A+ +   +    V  ++  
Sbjct: 2   EAFILLG--SFIVLILIGMPVAYALGLSALIGAWWIDIPLQAMMIQVASG---VNKFSLL 56

Query: 64  VIPMFMLMGALVSVSGVSRELFKAANSMIGHLRGGLGVATVVACGGFAAICGSSVATAAT 123
            IP F+L GA+++  G+SR L   A  ++G +RGGL +  ++A   F AI GSSVA  A+
Sbjct: 57  AIPFFVLAGAIMAEGGMSRRLVAFAGVLVGFVRGGLSLVNIMASTFFGAISGSSVADTAS 116

Query: 124 FSAVAYPEMRRFNYPQSFSTGVIAAGGTLGAILPPSTVLAVYAILT--QQDIGKLFMAGI 181
             +V  PEM R  YP+ FST V  +G     + PPS    +Y++       I  LFMAGI
Sbjct: 117 VGSVLIPEMERKGYPREFSTAVTVSGSVQALLTPPSHNSVLYSLAAGGTVSIASLFMAGI 176

Query: 182 VPGILAMAMYVMTIAIIVKLRPDWLPGGEIKPWSERVKDLKNVWAPLVLFVFVIGGLYGG 241
           +PG+L  A+ +    I  K R    P GE+ P  E +K        L+  V ++GG+  G
Sbjct: 177 MPGLLLSAVMMGLCLIFAKKRN--YPKGEVIPLREALKIAGEALWGLMAMVIILGGILSG 234

Query: 242 FFTPTEAGGVGASGAFILGL-VRRKLDGPKIREALLSATRTAAAVFTVLIGALLFGYFLT 300
            FT TE+  V    +F + + + R      + + +    RT + V  ++  A  FGY +T
Sbjct: 235 VFTATESAAVAVVWSFFVTMFIYRDYKWRDLPKLMHRTVRTISIVMILIGFAASFGYVMT 294

Query: 301 ITQSPQKLTEFLTGLGIGRYGVLALIMLMYLVLGCLMDAMAMIILTVPIIYPVIVHLGFD 360
           + Q P K+T     L   RY +L  I  M ++LG +MD   +I++  PI+ PVI  +G D
Sbjct: 295 LMQIPSKITTAFLTLSDNRYVILMCINFMLMLLGTVMDMAPLILILTPILLPVITGIGVD 354

Query: 361 PIWFGVIIVMTVELGLIHPPVGMNVFVIKSVVKDVSFTTIFKGVLPFIVTDIVRLVILIA 420
           P+ FG+I+++ + +GLI PPVG  +FV  S +  VS  +  K ++PF +   + L+ +  
Sbjct: 355 PVHFGMIMLVNLGIGLITPPVGAVLFV-GSAIGKVSIESTVKALMPFYLALFLVLMAVTY 413

Query: 421 FPIIALWLPT 430
            P I+LWLP+
Sbjct: 414 IPAISLWLPS 423