Pairwise Alignments

Query, 256 a.a., Hydroxymethylpyrimidine ABC transporter, transmembrane component from Variovorax sp. SCN45

Subject, 260 a.a., putative Nitrate ABC transporter, permease protein from Pseudomonas putida KT2440

 Score = 98.6 bits (244), Expect = 1e-25
 Identities = 62/253 (24%), Positives = 114/253 (45%), Gaps = 9/253 (3%)

Query: 4   TKQIERWSPWLL-LVAVILLWQIIC-----AGFEVSDFIFPSPLRIWNQFWEF--KEIIA 55
           T+ ++RW   L  L+A +L WQ+        G     ++ P+P  + +  W+      + 
Sbjct: 2   TRNLKRWPVRLASLLACLLFWQVAANVKMDLGLLTFTYV-PTPKAVLDAAWQLLTSSTLL 60

Query: 56  GHAWRTFWVTMAGFGLAIVVGVLLGFVIGSSRIAYAAIYPLMTAFNALPKAAFVPILVVW 115
            H   +     AG+  A +VGV LG +IG S+ A   + P +     +P  A++P+ ++ 
Sbjct: 61  AHLGSSLARVFAGYATAALVGVALGLLIGRSKWAEDTLLPPLEVLRPIPAVAWIPLAILM 120

Query: 116 FGIGAGPAILTAFLISFFPIMVNIATGLATLEPELEDVLRVLGAKRWDVLMKIGLPRSMP 175
           F       +   F  + FPI++N   G+  ++P L    R LGA RW +L ++ LP ++P
Sbjct: 121 FPSSELSMVFITFTGALFPILLNTVHGVEAVDPRLVASARSLGAGRWAILREVVLPGALP 180

Query: 176 YFFGSLKVAITLAFVGTTVSEMTAANEGIGYLLISAGSAMQMGLAFAGLMVVGAMAMLMY 235
                L + +  ++     +EM +   GIGY    + +         G++++G + M   
Sbjct: 181 SIVTGLAIGMGTSWFCLVTAEMISGQFGIGYYTWESYTLQNYPDIVVGMLLIGVLGMGSS 240

Query: 236 ELFSVIEKHTTGW 248
            L   +    T W
Sbjct: 241 ALVKRLGALATPW 253