Pairwise Alignments

Query, 345 a.a., Hydroxymethylpyrimidine ABC transporter, substrate-binding component from Variovorax sp. SCN45

Subject, 342 a.a., ABC transporter, periplasmic binding component-related protein from Pseudomonas putida KT2440

 Score = 57.8 bits (138), Expect = 4e-13
 Identities = 66/269 (24%), Positives = 109/269 (40%), Gaps = 46/269 (17%)

Query: 49  FFLALARGYYKDEGLDVSIDTGAGSVASITRIASGVYQLGLGDISSLVEFNAQ-----NP 103
           F+ ALA G Y+ EGLDVSI  G   V       +G+  L       +V ++ Q       
Sbjct: 52  FYQALADGLYEKEGLDVSIRMGGPQV-------NGMQLLVSKQADFIVNYDLQILKSVEQ 104

Query: 104 GTPMVQAVYQYYNRAPFVIIGRKDRGVTADFKSLAGKKVAAAAVESTRRAWPMVARKQGM 163
           G P+V AV   +   P  ++   D    +   +L GK V  +   S ++ W         
Sbjct: 105 GLPVV-AVAAPFQGDPQGLMTHAD---VSGLDALGGKPVLVST--SGQQTW--------- 149

Query: 164 RADAFQWQTTDFSARDNVMVRGDVDAATYFHDSAVSLFARMKPEELSVLK---------Y 214
               + W    +   DN       +   +  D   +  A    E    +K         +
Sbjct: 150 ----WPWLKGKYQLADNQARPYTFNLQPFLADPQTTQQAYASSELFQAIKAGVTPNFFLF 205

Query: 215 ADAGVNLYGNAILASSNLVAQNPKVVAAFLRASNRAIVETFANPGPSIAAMRQREPILDE 274
           ADAG   YG+ ++   +++A++P+ VA F+RAS         +P    A +++  P + +
Sbjct: 206 ADAGYPPYGSTVVTRQDIIAEHPERVAGFVRASMEGWKRYLDDPSAGNALIKRDNPNMTD 265

Query: 275 KIELERWGITA--QY--VGAGDTRGHGLG 299
             EL  WG++   QY  V  G+    G+G
Sbjct: 266 --ELLAWGVSTLKQYRLVTGGEAATQGIG 292