Pairwise Alignments

Query, 219 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 273 a.a., putative Amino acid ABC transporter, permease protein from Pseudomonas putida KT2440

 Score =  145 bits (367), Expect = 6e-40
 Identities = 80/201 (39%), Positives = 124/201 (61%), Gaps = 5/201 (2%)

Query: 16  LHGAGLTVLLTVLTMLVAVPLGIVLALMRLSSSKALSGASQVFVEFFRNLPLILVVYWAF 75
           L GA LT+ L + +M+V+V LG   AL RLS+S  L G +  +  FFR  PL++ +   +
Sbjct: 69  LQGAALTLFLCLCSMVVSVLLGFAAALARLSNSAVLVGVASFYTSFFRGTPLLIQILLIY 128

Query: 76  YVMPVLMHIEFSAFTTGLVALCLNVSAYNAETFRAGINSIRKGQMEAAIAMGMSRWQAMK 135
             +P +  +   A + G++AL LN  AY +E FRAGI  + +GQ EAA+A+GM   Q   
Sbjct: 129 LGLPQVGLVP-GAISAGIIALSLNYGAYLSEIFRAGILGVARGQREAALALGMRTPQIFC 187

Query: 136 KVVIPQAWRRVLPVLASTWVSLFKDTSLVSVIAVGELAHVALQIRSSSFRVLEMLTAMAV 195
            +++PQA R ++P  A+ ++S+ KD+SL+SV+ V E+  +A     SS+R LEMLT  AV
Sbjct: 188 HIILPQAMRVIIPPTANQFISMLKDSSLISVMGVWEVMFLAQSYGRSSYRYLEMLTTAAV 247

Query: 196 IYWLMGYPQAKLVDWIQKKFE 216
           IYW++      L++ +Q + E
Sbjct: 248 IYWVLSI----LLELLQARLE 264