Pairwise Alignments

Query, 276 a.a., ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 266 a.a., Amino acid ABC transporter, periplasmic amino acid-binding protein from Pseudomonas putida KT2440

 Score = 43.5 bits (101), Expect = 5e-09
 Identities = 51/199 (25%), Positives = 83/199 (41%), Gaps = 16/199 (8%)

Query: 7   LLAALLAAAFVGQAAAQTVPVPAPGTSARIDAIKKAGVLRAAVLSNPPWLVENTTGSGDA 66
           ++   L+   VG  A   V V A    A  DA+K+ G LR  +  +P ++    T     
Sbjct: 1   MIKKYLSRLLVGVTAL--VAVTAAQAGAIDDAVKR-GTLRVGM--DPTYMPFQMTNKRGE 55

Query: 67  WAGPAWLLANEVAKQLGVKLQAVPVSHETKVPVLASNQADMTISPLSVTPERLKVVD--- 123
             G    +   +AK +GVK +AV  +++  +P L +++ DM  S +++T ER   ++   
Sbjct: 56  IIGFEVDILKAMAKSMGVKFEAVSTAYDGIIPALLTDKFDMIGSGMTLTQERNLRLNFSE 115

Query: 124 -FVTYSRTALCVFGRADNPKVANAKSVDDFNNPNITVAYFTGGGEENWVKKRFPNAKLRG 182
            F+   +T L              KS  D NN    +    G   E   KK    AK  G
Sbjct: 116 PFIVVGQTLL-----IRKELAGEIKSYKDLNNEKYRLTSKLGTTGEMVSKKLISKAKYHG 170

Query: 183 VSTAGTAAPVEEIMAKRAD 201
                 A  V +++  +AD
Sbjct: 171 YDNEQEA--VMDVVNGKAD 187