Pairwise Alignments

Query, 178 a.a., no description from Variovorax sp. SCN45

Subject, 191 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 62.4 bits (150), Expect = 5e-15
 Identities = 52/176 (29%), Positives = 76/176 (43%), Gaps = 6/176 (3%)

Query: 5   SRAALSAFVTSHYVQLVRR---LTRHLGCPDLASDALHDAWLRLADIDSFHLVGNPDAYV 61
           S  A + FV     Q  R    ++R +GC   ASD + + +LR         V   D Y+
Sbjct: 14  SAGARARFVQVFQAQRARMEALVSRRVGCRATASDLVQELFLRFWRRPEVK-VEALDTYL 72

Query: 62  YRAACNAALDRLRSARLRQHAHEADAELARVADHAPGPHHIAEARSDVMAVDRAMRHLPH 121
            R A N A+D LRS   R+   EA   ++  A  A  P    E   D+  ++  +R LP 
Sbjct: 73  LRCAGNLAIDHLRSESSRERVAEAAVPVSE-ASLAQAPEQAVEVDHDLQRIEATLRALPE 131

Query: 122 RHRSILVGLRVHEMSRQEVAIRQGLSLRRVDTVLDQALAYCAGHLRGRPHAGPSAP 177
           R R I +  R+H     E+A    LS   V+  + +AL  C   +   P + P  P
Sbjct: 132 RTRQIFLLNRIHGCKYSEIAKAMQLSQSAVEKHMMRALEACKASV-AEPASTPRRP 186