Pairwise Alignments

Query, 178 a.a., no description from Variovorax sp. SCN45

Subject, 176 a.a., alternative sigma factor from Pseudomonas putida KT2440

 Score = 46.6 bits (109), Expect = 2e-10
 Identities = 41/157 (26%), Positives = 72/157 (45%), Gaps = 6/157 (3%)

Query: 9   LSAFVTSHYVQLVRRLTRHLGCPDLASDALHDAWLRLADIDSFHLVGNPD-AYVYRAACN 67
           L AFV +  + LV+   R  GC   A D + DA+ RL+             +Y+++   N
Sbjct: 15  LQAFVDNRSI-LVKIAARITGCRSRAEDVVQDAFFRLSTAPQITSSFKAQLSYLFQIVRN 73

Query: 68  AALDRLR--SARLRQHAHEADAELARVADHAPGPHHIAEARSDVMAVDRAMRHLPHRHRS 125
            A+D  R  +  L+    E +     V + +P   HI  A  + +A   A+  LP R R 
Sbjct: 74  LAIDHYRKQAMELKYSGSEEEGMNVVVQNASPEATHINRAALNDIA--EALNELPPRTRY 131

Query: 126 ILVGLRVHEMSRQEVAIRQGLSLRRVDTVLDQALAYC 162
                R++ + ++++A   G+S   V+ ++  AL +C
Sbjct: 132 AFEMYRLNGVPQKDIAKELGVSPTLVNFMIRDALVHC 168