Pairwise Alignments

Query, 178 a.a., no description from Variovorax sp. SCN45

Subject, 374 a.a., putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein from Pseudomonas putida KT2440

 Score = 76.6 bits (187), Expect = 5e-19
 Identities = 53/173 (30%), Positives = 88/173 (50%), Gaps = 4/173 (2%)

Query: 7   AALSAFVTSHYVQLVRRLTRHLGCPDLASDALHDAWLRLADIDSFHL-VGNPDAYVYRAA 65
           + L A    HY  L++ LTR +     A+D   + +L+L +ID   + V +  ++++R A
Sbjct: 7   SGLLASFQEHYDDLLQFLTRRMSDRQRAADVAQETYLKLVNIDEQAVPVLHARSFIFRVA 66

Query: 66  CNAALDRLRSARLRQHAHEADAELARVADHAPGPHHIAEARSDVMAVDRAMRHLPHRHRS 125
            N A+D LR  +    +H+       VA  AP P     AR  +  +D+A+  LP   R 
Sbjct: 67  GNLAIDALRREQRIAASHDDSDGACEVACPAPAPEAALLARERLQILDQALLQLPDNARQ 126

Query: 126 ILVGLRVHEMSRQEVAIRQGLSLRRVDTVLDQALAYCAGHLRGRPHAGPSAPI 178
            L+  RV  +++++VA R G+S   V   + QAL +C G L+    AG +A +
Sbjct: 127 ALLLNRVEGLTQKQVAQRLGVSESMVAKYIGQALRHCRGRLK---QAGVAASV 176