Pairwise Alignments

Query, 178 a.a., no description from Variovorax sp. SCN45

Subject, 170 a.a., RNA polymerase subunit sigma-24 from Pseudomonas putida KT2440

 Score = 52.0 bits (123), Expect = 5e-12
 Identities = 40/148 (27%), Positives = 67/148 (45%), Gaps = 3/148 (2%)

Query: 20  LVRRLTRHLGCPDLASDALHDAWLRLADIDSFHLVGNPDAYVYRAACNAALDRLRSARLR 79
           L+R L R +G P  A D L + +LR++       + + + +V++ A N ALD LR+ R++
Sbjct: 17  LLRTLQRMVGNPSTAEDLLQETYLRVSRALGERPIEHIEPFVFQTARNLALDHLRARRVQ 76

Query: 80  QHA---HEADAELARVADHAPGPHHIAEARSDVMAVDRAMRHLPHRHRSILVGLRVHEMS 136
                    D  L  VA  A      A A   +  +  ++  L  R + I +  R+H  +
Sbjct: 77  ARMLVDDVPDEVLHSVAAPATSSEDAAHAEQLLKHLSVSLNQLSERQQRIFILSRLHGAT 136

Query: 137 RQEVAIRQGLSLRRVDTVLDQALAYCAG 164
             E+A +  +S   V   L   +A C G
Sbjct: 137 YLEIAEQLSVSPSTVQKELKLIMAICMG 164