Pairwise Alignments

Query, 178 a.a., no description from Variovorax sp. SCN45

Subject, 172 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 57.4 bits (137), Expect = 1e-13
 Identities = 45/162 (27%), Positives = 68/162 (41%), Gaps = 2/162 (1%)

Query: 9   LSAFVTSHYVQLVRRLTRHLGCPDLASDALHDAWLRLADIDSFHLVGNPDAYVYRAACNA 68
           + A    H   L+  L R + C   A D   D ++RL   +       P A++   A   
Sbjct: 12  VGALYRDHRGWLLAWLQRSMACRQRAEDLSQDTFVRLLGREQLDTPREPRAFLAAVAKGL 71

Query: 69  ALDRLRSARLRQHAHEADAELARVADHAPGPHHIAEARSDVMAVDRAMRHLPHRHRSILV 128
             D  R A L Q A+ A+  L   A+  P P        D+ A+DR +  L  + R+  +
Sbjct: 72  MFDHFRRAALEQ-AYLAELALIPEAEQ-PSPEMQHLILEDLKAIDRLLGKLSSKARAAFL 129

Query: 129 GLRVHEMSRQEVAIRQGLSLRRVDTVLDQALAYCAGHLRGRP 170
             R+  M   E+A R G+S+ RV   + Q +  C   L G P
Sbjct: 130 HSRLDGMGHAEIAERLGVSVSRVRQYIAQGMRQCYVALYGEP 171