Pairwise Alignments

Query, 167 a.a., Extracytoplasmic function (ECF) sigma factor VreI from Variovorax sp. SCN45

Subject, 158 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 69.3 bits (168), Expect = 3e-17
 Identities = 45/153 (29%), Positives = 80/153 (52%), Gaps = 4/153 (2%)

Query: 17  YDQLKGQLTRRLGSSDLAGDALHDTWVRLAGKSEIEPVRQPQAFLLNAATNIAVDRLRVE 76
           Y +L   L+ RLGS   A D  HD ++R+  ++  E +  P+AFL   A N+ VDR R  
Sbjct: 5   YRELVSFLSARLGSRQAAEDVAHDAYLRVLERTGSEQIEHPRAFLYRTALNLVVDRHR-- 62

Query: 77  ARMLSESQVDDLFEVED--PAAGPAEALEARFELAALVGAMERLPARQREILFAVRLEGL 134
            +++ +++  D  + +    ++     L+    LA +  A++ L    R+     ++EGL
Sbjct: 63  RQLVRQAEPLDALDADSRLHSSELQHDLQLDQRLALMQKALDELSRPCRDSFLLRKIEGL 122

Query: 135 SRDELAERYGISVRMVARELQAAHEFCVRQMRR 167
           S  ++AER GIS  +V + +  A + C  +MR+
Sbjct: 123 SHQQIAERLGISRSLVEKHIVNAMKHCRVRMRQ 155