Pairwise Alignments

Query, 167 a.a., Extracytoplasmic function (ECF) sigma factor VreI from Variovorax sp. SCN45

Subject, 168 a.a., putative RNA polymerase sigma-70 factor from Pseudomonas putida KT2440

 Score = 60.8 bits (146), Expect = 1e-14
 Identities = 43/158 (27%), Positives = 81/158 (51%), Gaps = 6/158 (3%)

Query: 8   ELKRFLVERYDQLKGQLTRRLGSSDLAGDALHDTWVRLAGKSEIEPV--RQPQAFLLNAA 65
           +++    E +  L+G L R+LG++  A D  HDT+VRL  +    P    +P+A L + A
Sbjct: 11  QVQTLYTEHHGWLQGWLGRKLGNACDAADLAHDTFVRLLSRQG-NPYFGNEPRALLTHIA 69

Query: 66  TNIAVDRLRVEARMLSESQVDDLFEVEDPAAGPAEALEARFELAALVGAMER-LPARQRE 124
             + VDR R +   +  + ++ +  +  P     E      E    + AM R +PAR R+
Sbjct: 70  KGLVVDRWRRQD--VERAYLEAIAHLPQPEVPSPETRWLILETLYRIDAMLRDMPARVRQ 127

Query: 125 ILFAVRLEGLSRDELAERYGISVRMVARELQAAHEFCV 162
           +    +L+GL+  ++AE+  +S+  + R+++ A   C+
Sbjct: 128 VFLLSQLDGLTYAQIAEQLQVSLITIKRDMRTAFLACL 165