Pairwise Alignments

Query, 167 a.a., Extracytoplasmic function (ECF) sigma factor VreI from Variovorax sp. SCN45

Subject, 374 a.a., putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein from Pseudomonas putida KT2440

 Score = 85.5 bits (210), Expect = 9e-22
 Identities = 57/167 (34%), Positives = 86/167 (51%), Gaps = 2/167 (1%)

Query: 3   TEGLAELKRFLVERYDQLKGQLTRRLGSSDLAGDALHDTWVRLAGKSE-IEPVRQPQAFL 61
           T  ++ L     E YD L   LTRR+     A D   +T+++L    E   PV   ++F+
Sbjct: 3   TSPMSGLLASFQEHYDDLLQFLTRRMSDRQRAADVAQETYLKLVNIDEQAVPVLHARSFI 62

Query: 62  LNAATNIAVDRLRVEARML-SESQVDDLFEVEDPAAGPAEALEARFELAALVGAMERLPA 120
              A N+A+D LR E R+  S    D   EV  PA  P  AL AR  L  L  A+ +LP 
Sbjct: 63  FRVAGNLAIDALRREQRIAASHDDSDGACEVACPAPAPEAALLARERLQILDQALLQLPD 122

Query: 121 RQREILFAVRLEGLSRDELAERYGISVRMVARELQAAHEFCVRQMRR 167
             R+ L   R+EGL++ ++A+R G+S  MVA+ +  A   C  ++++
Sbjct: 123 NARQALLLNRVEGLTQKQVAQRLGVSESMVAKYIGQALRHCRGRLKQ 169