Pairwise Alignments

Query, 167 a.a., Extracytoplasmic function (ECF) sigma factor VreI from Variovorax sp. SCN45

Subject, 170 a.a., RNA polymerase subunit sigma-24 from Pseudomonas putida KT2440

 Score = 70.5 bits (171), Expect = 1e-17
 Identities = 50/155 (32%), Positives = 79/155 (50%), Gaps = 5/155 (3%)

Query: 12  FLVERYDQLKGQLTRRLGSSDLAGDALHDTWVRLAGKSEIEPVRQPQAFLLNAATNIAVD 71
           FLV+R   L+  L R +G+   A D L +T++R++      P+   + F+   A N+A+D
Sbjct: 10  FLVQRLTLLR-TLQRMVGNPSTAEDLLQETYLRVSRALGERPIEHIEPFVFQTARNLALD 68

Query: 72  RLR---VEARMLSESQVDD-LFEVEDPAAGPAEALEARFELAALVGAMERLPARQREILF 127
            LR   V+ARML +   D+ L  V  PA    +A  A   L  L  ++ +L  RQ+ I  
Sbjct: 69  HLRARRVQARMLVDDVPDEVLHSVAAPATSSEDAAHAEQLLKHLSVSLNQLSERQQRIFI 128

Query: 128 AVRLEGLSRDELAERYGISVRMVARELQAAHEFCV 162
             RL G +  E+AE+  +S   V +EL+     C+
Sbjct: 129 LSRLHGATYLEIAEQLSVSPSTVQKELKLIMAICM 163