Pairwise Alignments

Query, 580 a.a., ABC transporter, permease protein (cluster 10, nitrate/sulfonate/bicarbonate) / ABC transporter, permease protein (cluster 10, nitrate/sulfonate/bicarbonate) from Variovorax sp. SCN45

Subject, 698 a.a., glycine betaine ABC transporter, ATPase/permease fusion protein from Pseudomonas putida KT2440

 Score = 56.2 bits (134), Expect = 4e-12
 Identities = 51/181 (28%), Positives = 78/181 (43%), Gaps = 15/181 (8%)

Query: 79  SLFFAVATGYLAAKSRTARAFILPALDVLQSVPVLGFLSATVAAFMALFPGSLLGVECAA 138
           SL   + TG L AK   AR  + P LDV+Q++P   +L   VA F     G    V    
Sbjct: 520 SLLIGIPTGILLAKRALARRLVTPLLDVMQTLPTFVYLIPAVAFFSV---GKTPAVIATV 576

Query: 139 IFAIFTGQVWNMAFGFYHSMVTIPNDMQEAASTYGLTRAQRFRTVELPASAHSLIWNSMM 198
           IFA+    +   A G       +P    EAA  +G T  Q    VELP ++ SL+     
Sbjct: 577 IFAL-APMIRLTALGIQE----VPKAAVEAAVAHGATPWQTLTRVELPLASGSLLLGVNQ 631

Query: 199 SFGGGWFFVAQSEAISVMNKDIKLPGLGSYMAQAIAQGDNTAALWAVVAMIVLILVSDQL 258
           +       +  S ++ V+   I   GLG  +  A+        + A +A++   LV D++
Sbjct: 632 T-------IVMSLSMVVVAALIGAGGLGYDVMTALRNIKGGEGVLAGIAIVFCALVPDRI 684

Query: 259 V 259
           +
Sbjct: 685 I 685



 Score = 40.0 bits (92), Expect = 3e-07
 Identities = 53/218 (24%), Positives = 79/218 (36%), Gaps = 42/218 (19%)

Query: 331 LLWRAAGIVLAVWIGFEILKALAAAVAALHGALTLAGFGHIVWLGVLTALRVATMTVLAT 390
           L WR+AG +LA          L  A+A   G + L GF       + T   V    +L+ 
Sbjct: 477 LAWRSAGAILA----------LTTALAL--GYIGLFGFWERT---ISTIALVGASVLLSL 521

Query: 391 LIWVPVGVWIGSQPRVARFAQPLAQIGASFPVNMTFPIVVGFF--------VATHVTLNW 442
           LI +P G+ +  +    R   PL  +  + P  +     V FF        +AT +    
Sbjct: 522 LIGIPTGILLAKRALARRLVTPLLDVMQTLPTFVYLIPAVAFFSVGKTPAVIATVIFALA 581

Query: 443 GSILLIAMGTQWYILFNVIAGAMAIPNDLKEAARVYGLRDWNLWRTLILPAIFPYWVTGA 502
             I L A+G Q             +P    EAA  +G   W     + LP      + G 
Sbjct: 582 PMIRLTALGIQ------------EVPKAAVEAAVAHGATPWQTLTRVELPLASGSLLLGV 629

Query: 503 CTAAGGAWNASIVAELATWGSTTLKADGLGAYIATVTR 540
                 + +  +VA L       + A GLG  + T  R
Sbjct: 630 NQTIVMSLSMVVVAAL-------IGAGGLGYDVMTALR 660



 Score = 26.6 bits (57), Expect = 0.004
 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 8/87 (9%)

Query: 315 NPAAKVPVRLTVGGQKL-LWRA-----AGIVLAVWIGFEILKALAAAVAALHGALTLAGF 368
           +P   +P+ L +  Q L +WRA     AG ++      + + A A A+ AL G   +   
Sbjct: 382 SPGVALPLALLLVSQALTVWRALTPEAAGTLVQFPSDRDSMLAAAGAIDALIGWSQVTF- 440

Query: 369 GHIVWLGVLTALRVATMTVLATLIWVP 395
               ++GV+ A+R     V   L W+P
Sbjct: 441 -ESAFVGVIVAVRTVINGVEGALGWIP 466