Pairwise Alignments

Query, 400 a.a., ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

Subject, 378 a.a., branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein (braC-like) from Pseudomonas putida KT2440

 Score = 83.6 bits (205), Expect = 9e-21
 Identities = 85/336 (25%), Positives = 142/336 (42%), Gaps = 32/336 (9%)

Query: 14  LATAVAFPL-VAGAQPKTVKVGVLHPVTGALAYSGQQCRLGALMAIEDINAAGGIKSLGG 72
           LA AVA  L V+      VK+GV  P+TGA A  G+Q   GA  A + INAAGG+    G
Sbjct: 11  LALAVATALGVSSYVQADVKIGVAGPMTGANAAFGEQYMKGAQAAADKINAAGGV---NG 67

Query: 73  AKLEALLGDAQSQPQAGAAEVEKM-NEAGVSAIVGAFASAICLATTQAAAKYNLPHVVDV 131
            K+  + GD   +P+   A   ++ ++  V  +VG F S+  +  ++   +  +  +   
Sbjct: 68  EKIVLVKGDDACEPKQAVAVANRLVDQDKVIGVVGHFCSSNTIPASEVYDEAGVIAITPG 127

Query: 132 GVADQIVERGLKNTFRFGPGYKKSTEVAMANLLVLNKAAGSPAKTVMVIHEESLFGAGTA 191
               Q+ ERGL   FR      +   VA   ++ + K      K V V+H++  +G G A
Sbjct: 128 STNPQVTERGLSAMFRMCGRDDQQGIVAGDYIVDVLK-----GKKVAVLHDKDTYGQGLA 182

Query: 192 QLLSRELPGYGFEVKEVVKHANPTRDFNNIVLRMKSVNPDIVIPANYYNEYALLVRTMQQ 251
                +L   G +           +DF+ +V +++S   D+V     + E   LVR +++
Sbjct: 183 DATKAQLEKRGVKPVLYEGLTRGEKDFSAVVTKIRSTGADVVYFGGLHPEAGPLVRQLRE 242

Query: 252 Q-----------KVVPKAIFSVLGGAASSYKFVKEFPDAANGIIDCNHWFNPKDKRSQEL 300
           Q            +V   + S  GGA        ++ D        +    P  K   E 
Sbjct: 243 QGLKDVKFMSDDGIVTDELVSTAGGA--------QYVDGVYMTFGADPRLLPDSKAVVEE 294

Query: 301 RKRVEAKGQFFSYEVFMTYTSMWLLADAIERAKSTE 336
            ++   + + ++      Y S+  LA A   AKS +
Sbjct: 295 FRKAGTEPEGYT---LYAYASLQALAAAFNGAKSNK 327