Pairwise Alignments

Query, 1166 a.a., Two-component system sensor histidine kinase from Variovorax sp. SCN45

Subject, 917 a.a., Sensor protein GacS from Pseudomonas putida KT2440

 Score =  189 bits (480), Expect = 9e-52
 Identities = 131/357 (36%), Positives = 189/357 (52%), Gaps = 15/357 (4%)

Query: 373 SQLLDVVADDIGSSLAAARYREQLQDVLAETQQLNEELQVQQEELRT---ANEELEEQSR 429
           + LL ++A    S L A R    + D +   +    +L+    E R     + EL+E + 
Sbjct: 172 TSLLLILACLALSGLLALRMSRTINDPIERIKHAVNQLKDGHLEERLPTMGSHELDELAH 231

Query: 430 ALRASQAMLENQQAELEQTNSQLSERTEALDQRNTALRRVQRDLEDRADELQRASRYKSE 489
            +      L+N   EL+ +   + + TE + Q    +     +L+    E   ASR KSE
Sbjct: 232 GINRMAETLQNAHEELQHS---IDQATEDVRQNLETIEIQNIELDMARKEALEASRIKSE 288

Query: 490 FLANMSHELRTPLNSALILAKLLGDNPQGNLSPEQVKFAESIYSSGNDLLVLINDILDIS 549
           FLANMSHE+RTPLN  L    LL    +  ++P Q+ +  +I  S ++LL +IN+ILD S
Sbjct: 289 FLANMSHEIRTPLNGILGFTHLL---QKSEMTPRQLDYLNTIEKSADNLLGIINEILDFS 345

Query: 550 KVEAGKLEVVPEDVPLRRLAESLETTFRPLAMQKNLSFRLDIRPDAPGSLVTDSQRVEQI 609
           K+EAGKL +      LR L +   T   P A  K L     I  D P SLV D  R++QI
Sbjct: 346 KIEAGKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLELLSLIYRDTPASLVGDPLRLKQI 405

Query: 610 LKNLLSNALKFTDRGEV---ALVVSGTAD-GGAAFAVSDSGIGIDPQQHELIFEAFRQAD 665
           L NL+SNA+KFT  G +   A++     D      +V D+GIG+ PQ    +F+AF QAD
Sbjct: 406 LTNLVSNAIKFTREGTIVVRAMLEDEHEDCAQLRISVQDTGIGLSPQDVRTLFQAFSQAD 465

Query: 666 GTTSRRYGGTGLGLSISRDLTQLLGGTLAVQSQPGQGSTFVLQLPAKAPQASGNASA 722
            + +R+ GGTGLGL IS+ L + +GG + V S PG+GS F + L    P+A  +A A
Sbjct: 466 NSLARQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSQFWISL--NLPKAHDDAEA 520



 Score = 76.6 bits (187), Expect = 8e-18
 Identities = 44/119 (36%), Positives = 67/119 (56%), Gaps = 4/119 (3%)

Query: 1044 ILLVDDDVRNIFALTSALEQRGAAVEIGRNGREALEKLDQVREIDLVLMDVMMPEMDGLE 1103
            IL VDD+  N+  + + LE  GA V    NG  A++ + Q    DLVLMDV MP MDG  
Sbjct: 670  ILCVDDNAANLLLVKTLLEDLGAEVLAVNNGYAAVQAV-QEELFDLVLMDVQMPGMDGRA 728

Query: 1104 ATRRMRADPRFEK---MPVIAITAKAMKDDREQCLAAGANDYLAKPVDLERLFSLLRVW 1159
             T ++R     +    +P++A+TA AM +++   L +G +DYL KP+   +L  ++  W
Sbjct: 729  CTEQIRLWENTQSGNPLPIVALTAHAMANEKRALLHSGMDDYLTKPISERQLAQVVMKW 787



 Score = 42.0 bits (97), Expect = 2e-07
 Identities = 135/666 (20%), Positives = 239/666 (35%), Gaps = 141/666 (21%)

Query: 366 GALDER----GSQLLDVVADDIGSSLAAARYREQLQDVLAETQ----QLNEELQVQQEEL 417
           G L+ER    GS  LD +A  I       R  E LQ+   E Q    Q  E+++   E +
Sbjct: 212 GHLEERLPTMGSHELDELAHGIN------RMAETLQNAHEELQHSIDQATEDVRQNLETI 265

Query: 418 RTANEELE----EQSRALRASQAMLENQQAELEQTNSQLSERTEALDQRNTALRRVQ--R 471
              N EL+    E   A R     L N   E+    + +   T  L +     R++    
Sbjct: 266 EIQNIELDMARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEMTPRQLDYLN 325

Query: 472 DLEDRADELQRASRYKSEF---------LANMSHELRTPLNSALIL-------------- 508
            +E  AD L        +F         L ++   LR  +   L +              
Sbjct: 326 TIEKSADNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLELLS 385

Query: 509 -------AKLLGDNPQ-----GNLSPEQVKFAESIYSSGNDLLVLINDILDISKVEAGKL 556
                  A L+GD  +      NL    +KF         +  +++  +L+    +  +L
Sbjct: 386 LIYRDTPASLVGDPLRLKQILTNLVSNAIKFTR-------EGTIVVRAMLEDEHEDCAQL 438

Query: 557 EVVPEDVPLRRLAESLETTFRPLAMQKNLSFRLDIRPDAPG-SLVTDSQRVEQILKNLLS 615
            +  +D  +    + + T F+  +   N   R   +P   G  LV   + +EQ+      
Sbjct: 439 RISVQDTGIGLSPQDVRTLFQAFSQADNSLAR---QPGGTGLGLVISKRLIEQM------ 489

Query: 616 NALKFTDRGEVALVVSGTADGGAAFAVS-------DSGIGIDPQ----QHELIFEAFRQA 664
                   GE+   V  T   G+ F +S       D    + PQ    +   I +    A
Sbjct: 490 -------GGEIG--VDSTPGEGSQFWISLNLPKAHDDAEALPPQPLLGRRAAIVDGHELA 540

Query: 665 DGTTSRRYGGTGLGLSISRDLTQLLGGTLAVQSQPGQGSTFVL---QLPAKAPQASGN-- 719
                 +    GL +S+     QLL G  A  SQ G    F +    L   +P+  G+  
Sbjct: 541 RQALEHQLEDCGLSVSLFASYDQLLQGVQAA-SQAGLPFEFAVLGANLGNLSPEQLGHYH 599

Query: 720 -------------ASATQSPIYTPKPAHAPVGQAPAAPATPLA--------PQPPSPVPA 758
                           T+  +Y P   +   GQ  + P              QP  P+  
Sbjct: 600 QQLERYHCQCVVLCPTTEQALYHPYLPNGH-GQLLSKPTCTRKLRRLLLELVQPRRPLA- 657

Query: 759 PQFADDRSLPRDQVR-RVLVIEDEPQFAHILYDLAHELGYRCLVAHGAADGFELATQFVP 817
                + S P  Q R ++L ++D      ++  L  +LG   L  +      +   + + 
Sbjct: 658 -----EGSNPNGQRRPKILCVDDNAANLLLVKTLLEDLGAEVLAVNNGYAAVQAVQEELF 712

Query: 818 DAILLDMRLPDSTGLDVLQRLKDSPHTRH-IPIHVVS----AADNAQGAALQMGAIGYAL 872
           D +L+D+++P   G    ++++   +T+   P+ +V+    A  N + A L  G   Y  
Sbjct: 713 DLVLMDVQMPGMDGRACTEQIRLWENTQSGNPLPIVALTAHAMANEKRALLHSGMDDYLT 772

Query: 873 KPTTRDELMRVFAR---LEDKLTQKVKVVLLVEDDDLQRESVMRLIEDDDIEIVAVGSGE 929
           KP +  +L +V  +   L     Q+ +  LL   D+L      ++++ ++   +A G  +
Sbjct: 773 KPISERQLAQVVMKWTGLSLGTPQQAQAELLTNGDEL------KVLDPEEGLRLAAGKAD 826

Query: 930 EALELL 935
            A ++L
Sbjct: 827 LAADML 832



 Score = 40.0 bits (92), Expect = 9e-07
 Identities = 19/62 (30%), Positives = 37/62 (59%)

Query: 893 QKVKVVLLVEDDDLQRESVMRLIEDDDIEIVAVGSGEEALELLRTRVFDCMITDLRLPDM 952
           Q+   +L V+D+      V  L+ED   E++AV +G  A++ ++  +FD ++ D+++P M
Sbjct: 665 QRRPKILCVDDNAANLLLVKTLLEDLGAEVLAVNNGYAAVQAVQEELFDLVLMDVQMPGM 724

Query: 953 QG 954
            G
Sbjct: 725 DG 726