Pairwise Alignments

Query, 176 a.a., Sigma factor PvdS, controling pyoverdin biosynthesis from Variovorax sp. SCN45

Subject, 172 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score = 66.2 bits (160), Expect = 3e-16
 Identities = 43/149 (28%), Positives = 74/149 (49%), Gaps = 3/149 (2%)

Query: 7   PAEPTLGEVFIANRPQLQRVAQKIVRTADLADEVLQDAYLKLADGAAVRDVRKPLGYCCQ 66
           P    +G ++  +R  L    ++ V     A+++ QD +++L     +R  R+P  +   
Sbjct: 7   PHSELVGALYRDHRGWLLAWLRRNVACPSRAEDLSQDTFMRLLGRDELRAPREPRAFLMA 66

Query: 67  VVRNVAFDYHRHHSVEASYRTYCEDVELVSPPSNDAPERVLDGRQALAAIDRVLDALPAR 126
           + + + FDY R  ++E +Y T   ++ L+    + +PE      + L AIDR+L  L ++
Sbjct: 67  IAKGLLFDYFRRAALEQAYLT---ELMLIPESEHPSPEEQHLILEDLKAIDRLLGKLSSK 123

Query: 127 TRTAFELNRLSGMTQREIGVRLGCSATLV 155
            R AF  NRL G+   EI  RLG S   V
Sbjct: 124 ARAAFLYNRLDGIGHAEIAQRLGVSVPRV 152