Pairwise Alignments

Query, 176 a.a., Sigma factor PvdS, controling pyoverdin biosynthesis from Variovorax sp. SCN45

Subject, 176 a.a., alternative sigma factor from Pseudomonas putida KT2440

 Score = 99.4 bits (246), Expect = 3e-26
 Identities = 63/169 (37%), Positives = 94/169 (55%), Gaps = 5/169 (2%)

Query: 3   MSLQPAEPTLGEVFIANRPQLQRVAQKIVRTADLADEVLQDAYLKLADGAAVRDVRKP-L 61
           +S    +  L + F+ NR  L ++A +I      A++V+QDA+ +L+    +    K  L
Sbjct: 5   LSTSKCDSPLLQAFVDNRSILVKIAARITGCRSRAEDVVQDAFFRLSTAPQITSSFKAQL 64

Query: 62  GYCCQVVRNVAFDYHRHHSVEASYRTYCEDVELVSPPSNDAPERVLDGRQALAAIDRVLD 121
            Y  Q+VRN+A D++R  ++E  Y +  E+  +     N +PE     R AL  I   L+
Sbjct: 65  SYLFQIVRNLAIDHYRKQAMELKY-SGSEEEGMNVVVQNASPEATHINRAALNDIAEALN 123

Query: 122 ALPARTRTAFELNRLSGMTQREIGVRLGCSATLVNFMIKDADAALESCR 170
            LP RTR AFE+ RL+G+ Q++I   LG S TLVNFMI+D   AL  CR
Sbjct: 124 ELPPRTRYAFEMYRLNGVPQKDIAKELGVSPTLVNFMIRD---ALVHCR 169