Pairwise Alignments

Query, 176 a.a., Sigma factor PvdS, controling pyoverdin biosynthesis from Variovorax sp. SCN45

Subject, 170 a.a., RNA polymerase, sigma 19 factor from Pseudomonas putida KT2440

 Score = 61.6 bits (148), Expect = 7e-15
 Identities = 48/165 (29%), Positives = 81/165 (49%), Gaps = 9/165 (5%)

Query: 7   PAEPTLGEVFIANRPQLQRVAQKIVRTADLADEVLQDAYLK-LADGAAVRDVRKPLGYCC 65
           P EP L  ++  +R  L+   ++ +  A  A ++ QD +L+ LA    + D+R+P  Y  
Sbjct: 7   PPEPGLPALYREHRGWLEAWLRRRMGNAWDAADLSQDTFLRILASAQPLADIREPRAYLL 66

Query: 66  QVVRNVAFDYHRHHSVEASYRTYCEDVELVSPPSNDAPERVLDGRQALAAIDRVLDALPA 125
            V + +  ++H+  S+E +Y      +     PS   PE+     + L A+D +LD L  
Sbjct: 67  TVGKRLLSNFHQRRSLEQAYLDALAQLPEQHVPS---PEQRWVLLETLQALDELLDGLKP 123

Query: 126 RTRTAFELNRLSGMTQREIGVRLG-CSATLVNFMIKDADAALESC 169
             R AF  ++L G+   EIG RLG C  ++  +M +    A E C
Sbjct: 124 AIRKAFLWSQLEGLGYAEIGQRLGVCQRSVKRYMAQ----AYEHC 164