Pairwise Alignments

Query, 176 a.a., Sigma factor PvdS, controling pyoverdin biosynthesis from Variovorax sp. SCN45

Subject, 171 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 57.4 bits (137), Expect = 1e-13
 Identities = 42/166 (25%), Positives = 79/166 (47%), Gaps = 8/166 (4%)

Query: 4   SLQPAEPTLGEVFIANRPQLQRVAQKIVRTADLADEVLQDAYLKLADGAAVRDVRKPLGY 63
           +L+P E  L  ++ ++   L+   +  V  ++ A ++ QD +++L     +  +++P  Y
Sbjct: 6   TLKPTEVAL--LYQSHHTWLRGWLRSRVGCSEHAADLAQDTFVRLLRARQMSPLKEPRAY 63

Query: 64  CCQVVRNVAFDYHRHHSVEASYRTYCEDVELVSPPSNDAPERVLDGRQALAAIDRVLDAL 123
              + R +  D  R  ++E +Y+     +     PS +    +LD   +L  +DR L  L
Sbjct: 64  LSSIARGLMIDQFRRRALERAYQEGLAHLPEAEVPSEEDKLVILD---SLERLDRALQQL 120

Query: 124 PARTRTAFELNRLSGMTQREIGVRLGCSATLVNFMIKDADAALESC 169
             R R AF L +L G++  ++  RLG S   V    +D   AL +C
Sbjct: 121 KPRVRQAFLLAQLDGLSIVQVAQRLGVSRATVE---RDLAKALGAC 163