Pairwise Alignments

Query, 176 a.a., Sigma factor PvdS, controling pyoverdin biosynthesis from Variovorax sp. SCN45

Subject, 178 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 53.5 bits (127), Expect = 2e-12
 Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 8/165 (4%)

Query: 3   MSLQPAEPTLG----EVFIANRPQLQRVAQKIVRTADLADEVLQDAYLKLADGAAV-RDV 57
           M+  P+ P  G    E++ ++   +++  Q+ +  A  A E+ QD +++L     V  D 
Sbjct: 1   MNASPSAPAPGFDLEELYRSHHGWIRQWLQRKLGNAHDAAELAQDVFVRLLSKPRVFNDH 60

Query: 58  RKPLGYCCQVVRNVAFDYHRHHSVEASYRTYCEDVELVSPPSNDAPERVLDGRQALAAID 117
                Y  ++ RN   D+ R   VE +Y            PS +    +L+  + L A+ 
Sbjct: 61  EHARAYLGRMSRNACVDFWRRRRVEQAYLEVLAAQPEQLAPSLEHQAVILETLEQLQAM- 119

Query: 118 RVLDALPARTRTAFELNRLSGMTQREIGVRLGCSATLVNFMIKDA 162
              + +P R   AF + +L GM QREI  +LG S   VN  +  A
Sbjct: 120 --FERMPQRVAEAFSMAQLQGMKQREIAEQLGVSERSVNSYLAQA 162