Pairwise Alignments

Query, 176 a.a., Sigma factor PvdS, controling pyoverdin biosynthesis from Variovorax sp. SCN45

Subject, 172 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 62.8 bits (151), Expect = 3e-15
 Identities = 42/155 (27%), Positives = 73/155 (47%), Gaps = 3/155 (1%)

Query: 1   MDMSLQPAEPTLGEVFIANRPQLQRVAQKIVRTADLADEVLQDAYLKLADGAAVRDVRKP 60
           M  +  P    +G ++  +R  L    Q+ +     A+++ QD +++L     +   R+P
Sbjct: 1   MSSAQSPHADLVGALYRDHRGWLLAWLQRSMACRQRAEDLSQDTFVRLLGREQLDTPREP 60

Query: 61  LGYCCQVVRNVAFDYHRHHSVEASYRTYCEDVELVSPPSNDAPERVLDGRQALAAIDRVL 120
             +   V + + FD+ R  ++E +Y      +     PS +    +L+    L AIDR+L
Sbjct: 61  RAFLAAVAKGLMFDHFRRAALEQAYLAELALIPEAEQPSPEMQHLILED---LKAIDRLL 117

Query: 121 DALPARTRTAFELNRLSGMTQREIGVRLGCSATLV 155
             L ++ R AF  +RL GM   EI  RLG S + V
Sbjct: 118 GKLSSKARAAFLHSRLDGMGHAEIAERLGVSVSRV 152