Pairwise Alignments

Query, 355 a.a., Probable transmembrane sensor from Variovorax sp. SCN45

Subject, 374 a.a., putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein from Pseudomonas putida KT2440

 Score = 69.7 bits (169), Expect = 1e-16
 Identities = 59/212 (27%), Positives = 93/212 (43%), Gaps = 42/212 (19%)

Query: 117 WQQ-PVFHAAYNTRTAQMLKVSLADGAGDAPGSQLDIAPQSAIDVTLYRQRRVVEMARGE 175
           WQQ P+  A Y+T   +   ++L DG      +++ +   SA+ V      R V +  GE
Sbjct: 186 WQQAPILLADYHTAVGERQVITLTDG------TRVTLNSASALSVAFSEHERRVVLDAGE 239

Query: 176 VRFEVAHDARRPFQVRTRGAVIEVVGTVFTVRDRGGPITVGVEQGHVRVQVRARQDGGAP 235
             FE A D+R PF V T GA ++     F+V+            GHV             
Sbjct: 240 ALFETADDSR-PFVVETAGARVQGNAATFSVQ----------RDGHVV------------ 276

Query: 236 YANATEVIDLRRGELIEVRDGHADAVRQSDTRALSAWRDGWLVFDNTPLGEALAVVNSYR 295
                    L RGE    + G  +    +D     AW+ G L+F+  PLG+ L  +  YR
Sbjct: 277 ---------LARGE---AKVGEHELAVAADAGTQMAWQRGKLIFNGKPLGQVLTELERYR 324

Query: 296 ASPIVGANARIDALRLSGRFRSNDSVALVALL 327
              IV +++++ A+ +SG F  ++  AL+  L
Sbjct: 325 HGRIVLSDSKLAAMEVSGVFDLDEPEALLRTL 356