Pairwise Alignments

Query, 210 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 171 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score = 65.1 bits (157), Expect = 7e-16
 Identities = 54/172 (31%), Positives = 85/172 (49%), Gaps = 23/172 (13%)

Query: 10  AHYADLRRQLTRDLRDPHYAADIAQSSFERVFAQATKSLGAARGTGAEVAAPDDAKDAGS 69
           AH+A LR  L+R      +AAD+AQ +F R+       L A R                 
Sbjct: 18  AHHAWLRGWLSRRTGCREHAADLAQETFVRL-------LNARRQ---------------Q 55

Query: 70  GIESPRALLFRVARNLCIDDARRRKVAQEWVGTHAAIGTHLVAPSSEFILAQQRVLARVV 129
            ++ PRA L  +AR+L ID  RRR++ + ++ + A     +  PS E  L     L R+ 
Sbjct: 56  TLQQPRAYLSSIARSLMIDQYRRRELERAYLESLAHF-PQVEVPSEETRLLILDSLERID 114

Query: 130 ETMEKLPPRRRQVFLLFRAYGHTRAEIAQQLDITEMAVAKHLLRATIDCSRV 181
             +++L PR R+ FLL +  G T A+IA +L +++  V + L +A   C R+
Sbjct: 115 RLLDQLKPRVREAFLLAQLDGLTCAQIALRLGVSKATVERDLSKALHACYRL 166