Pairwise Alignments

Query, 210 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 169 a.a., KEGG: RNA polymerase sigma-70 factor, ECF subfamily from Variovorax sp. SCN45

 Score = 55.5 bits (132), Expect = 6e-13
 Identities = 49/168 (29%), Positives = 75/168 (44%), Gaps = 23/168 (13%)

Query: 11  HYADLRRQLTRDLRDPHYAADIAQSSFERVFAQATKSLGAARGTGAEVAAPDDAKDAGSG 70
           H+  L   L R L +   AAD+AQ +F R+ +                     + +AG  
Sbjct: 18  HHPWLLDMLRRKLGNLDNAADLAQDTFVRILS---------------------SNEAGP- 55

Query: 71  IESPRALLFRVARNLCIDDARRRKVAQEWVGTHAAIGTHLVAPSSEFILAQQRVLARVVE 130
           +  PRA L  VA  +     RR  + + ++   A +     APS E  L     LA V  
Sbjct: 56  LREPRAYLTTVASRIAAQYFRRLALERTYLEAIAHL-PEASAPSPETRLLVVEALAAVSR 114

Query: 131 TMEKLPPRRRQVFLLFRAYGHTRAEIAQQLDITEMAVAKHLLRATIDC 178
            ++ L P  R++FL+ +  G T ++IAQQL +T   V K +L+A   C
Sbjct: 115 VLDGLKPHVREIFLMAQLDGLTYSQIAQQLGVTINVVQKAMLKAYRHC 162