Pairwise Alignments

Query, 210 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 170 a.a., KEGG: RNA polymerase sigma-70 factor, ECF subfamily from Variovorax sp. SCN45

 Score = 61.2 bits (147), Expect = 1e-14
 Identities = 50/173 (28%), Positives = 82/173 (47%), Gaps = 23/173 (13%)

Query: 15  LRRQLTRDLRDPHYAADIAQSSFERVFAQATKSLGAARGTGAEVAAPDDAKDAGSGIESP 74
           L+  L R L D H AAD+ Q +F RV +            G +  A          I+ P
Sbjct: 21  LQGWLRRRLGDGHTAADLTQDTFVRVIS------------GGQAQA----------IQEP 58

Query: 75  RALLFRVARNLCIDDARRRKVAQEWVGTHAAIGTHLVAPSSEFILAQQRVLARVVETMEK 134
           RA L  +A+ +  +  RRR++ + W+   AA    L APS E     +  +  +   ++ 
Sbjct: 59  RAYLTTLAQRVLYNFWRRRELERAWLDALAAQPQEL-APSPETYALVREAVETIDRWLDG 117

Query: 135 LPPRRRQVFLLFRAYGHTRAEIAQQLDITEMAVAKHLLRATIDCSRVFAELRA 187
           LPP+ R+ FLL R  G   A+IA ++ I+  +V +++ +A +      A+L A
Sbjct: 118 LPPKVREAFLLRRLEGLAHADIAVRMGISITSVERYVKQAIVHLYTCPAQLEA 170