Pairwise Alignments

Query, 210 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 170 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 54.3 bits (129), Expect = 1e-12
 Identities = 47/169 (27%), Positives = 79/169 (46%), Gaps = 23/169 (13%)

Query: 10  AHYADLRRQLTRDLRDPHYAADIAQSSFERVFAQATKSLGAARGTGAEVAAPDDAKDAGS 69
           AH+  L   L R L  PH AAD+AQ ++ R+                       A++A  
Sbjct: 21  AHHNWLTGWLRRRLGCPHSAADLAQDTYMRLL---------------------QAREAPQ 59

Query: 70  GIESPRALLFRVARNLCIDDARRRKVAQEWVGTHAAIGTHLVAPSSEFILAQQRVLARVV 129
            +E PRA L  VA+ +  +  RR+++ + ++   A +    VAP  E        L  + 
Sbjct: 60  LVE-PRAFLATVAKRVLCNHFRRQELERAYLQALAQVPEE-VAPCEEQKAIIFETLLALD 117

Query: 130 ETMEKLPPRRRQVFLLFRAYGHTRAEIAQQLDITEMAVAKHLLRATIDC 178
             ++ LPP  ++ FLL +  G  + EIA++L I+   V ++L +A + C
Sbjct: 118 HLLDGLPPLVKRAFLLAQVDGLGQGEIARELGISLATVKRYLNKAAMRC 166