Pairwise Alignments

Query, 210 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 191 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 63.5 bits (153), Expect = 2e-15
 Identities = 48/173 (27%), Positives = 77/173 (44%), Gaps = 10/173 (5%)

Query: 22  DLRDPHYAADIAQSSFERVFAQATKSLGA--ARGTGAEVAAPDDAKDA--------GSGI 71
           D+ +PH  +  A++ F +VF      + A  +R  G    A D  ++            +
Sbjct: 6   DIIEPHADSAGARARFVQVFQAQRARMEALVSRRVGCRATASDLVQELFLRFWRRPEVKV 65

Query: 72  ESPRALLFRVARNLCIDDARRRKVAQEWVGTHAAIGTHLVAPSSEFILAQQRVLARVVET 131
           E+    L R A NL ID  R     +        +    +A + E  +     L R+  T
Sbjct: 66  EALDTYLLRCAGNLAIDHLRSESSRERVAEAAVPVSEASLAQAPEQAVEVDHDLQRIEAT 125

Query: 132 MEKLPPRRRQVFLLFRAYGHTRAEIAQQLDITEMAVAKHLLRATIDCSRVFAE 184
           +  LP R RQ+FLL R +G   +EIA+ + +++ AV KH++RA   C    AE
Sbjct: 126 LRALPERTRQIFLLNRIHGCKYSEIAKAMQLSQSAVEKHMMRALEACKASVAE 178