Pairwise Alignments

Query, 210 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 176 a.a., alternative sigma factor from Pseudomonas putida KT2440

 Score = 52.0 bits (123), Expect = 7e-12
 Identities = 39/143 (27%), Positives = 68/143 (47%), Gaps = 13/143 (9%)

Query: 50  AARGTGAEVAAPDDAKDA----------GSGIESPRALLFRVARNLCIDDARRRKVAQEW 99
           AAR TG    A D  +DA           S  ++  + LF++ RNL ID  R++ +  ++
Sbjct: 29  AARITGCRSRAEDVVQDAFFRLSTAPQITSSFKAQLSYLFQIVRNLAIDHYRKQAMELKY 88

Query: 100 VGTHAAIGTHLVAP--SSEFILAQQRVLARVVETMEKLPPRRRQVFLLFRAYGHTRAEIA 157
            G+    G ++V    S E     +  L  + E + +LPPR R  F ++R  G  + +IA
Sbjct: 89  SGSEEE-GMNVVVQNASPEATHINRAALNDIAEALNELPPRTRYAFEMYRLNGVPQKDIA 147

Query: 158 QQLDITEMAVAKHLLRATIDCSR 180
           ++L ++   V   +  A + C +
Sbjct: 148 KELGVSPTLVNFMIRDALVHCRK 170