Pairwise Alignments

Query, 210 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 158 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 52.0 bits (123), Expect = 6e-12
 Identities = 41/133 (30%), Positives = 62/133 (46%), Gaps = 9/133 (6%)

Query: 55  GAEVAAPDDAKDA---------GSGIESPRALLFRVARNLCIDDARRRKVAQEWVGTHAA 105
           G+  AA D A DA            IE PRA L+R A NL +D  RR+ V Q        
Sbjct: 17  GSRQAAEDVAHDAYLRVLERTGSEQIEHPRAFLYRTALNLVVDRHRRQLVRQAEPLDALD 76

Query: 106 IGTHLVAPSSEFILAQQRVLARVVETMEKLPPRRRQVFLLFRAYGHTRAEIAQQLDITEM 165
             + L +   +  L   + LA + + +++L    R  FLL +  G +  +IA++L I+  
Sbjct: 77  ADSRLHSSELQHDLQLDQRLALMQKALDELSRPCRDSFLLRKIEGLSHQQIAERLGISRS 136

Query: 166 AVAKHLLRATIDC 178
            V KH++ A   C
Sbjct: 137 LVEKHIVNAMKHC 149